Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2342
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    27   2.3  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   5.4  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    25   7.2  

>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 133 VLNQALVVMLCTQCPYIQFMRHNTSVFVGQPL 38
           ++ Q  VV+ CT   Y +++  +T V +G+PL
Sbjct: 130 IIEQYDVVLDCTDNQYTRYLISDTCVLLGRPL 161


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 27  LRTYSGWPTKTEVLCLI 77
           LR  + WP KT V+CLI
Sbjct: 78  LRVPNWWPCKTTVVCLI 94


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 2   LLKAYQSSPAYLQ-WLAHKNRGIVPHKLNIRALCTQHHNQSLI*HQSLAGFSRNYWL 169
           +LK+   S   L  W+  K+ G VP +++I      H + +++   +    + NY+L
Sbjct: 531 ILKSISKSRILLDSWMRDKDLGTVPMEISILHFLKAHSHPNIVKMITFFEDNENYYL 587


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,746,414
Number of Sequences: 5004
Number of extensions: 32449
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)