Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2341
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   2.1  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    25   4.8  
SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom...    25   6.4  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    25   8.4  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 294 ENSVKPENARLPKSGTASRAIAPVAAANEREHCNGANERR 413
           E+S    N  LPKS  +  A AP+ +++  ++ N    RR
Sbjct: 548 ESSTVQTNKYLPKSSASPPANAPIVSSDVHKNENAGTARR 587


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = +3

Query: 210 KTFHKFGH**SIQQEKEYEQKHL*TLETENSVKPENARLPKSGT-ASRAIAPV-AAANER 383
           K+F  FG+  S+Q    +    +  L   +S    N  L +S   AS   A + AAA   
Sbjct: 420 KSFSSFGNV-SLQVPSSHRDTDVVLLSGRHSDSDGNGALKRSKIYASEITARMRAAATML 478

Query: 384 EHCNGANERRPKLET*NIRTQFEL 455
              +    RRPK ET  I+    L
Sbjct: 479 SQLDAEGSRRPKAETERIKNSIIL 502


>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 55  DKCKSRTIPENIKFVLLFIEDNGD 126
           +KCK R++     +  LF +DN D
Sbjct: 91  EKCKGRSLSNATSYSTLFEDDNAD 114


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = +1

Query: 43  SFIQDKCKSRTIPENIKFVLLFIEDNGD--PSCLVKFANSYICNLALMELENVEIDGKRL 216
           +FIQ    S   P N+K +      +      C V+F++S     ALM+  N  I G   
Sbjct: 99  TFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHC 158

Query: 217 FINLD 231
              L+
Sbjct: 159 TFKLN 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,907,961
Number of Sequences: 5004
Number of extensions: 35882
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)