Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2341
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0087 - 10520708-10520823,10521041-10521130,10521571-105219...    29   2.1  
01_06_1483 + 37683559-37683922,37684916-37685193,37685865-37686167     27   8.5  

>10_06_0087 -
           10520708-10520823,10521041-10521130,10521571-10521901,
           10522248-10522409,10522506-10522726,10523852-10524056
          Length = 374

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = +1

Query: 10  IPKFWNAEKVKSFIQDKCKSRTIPENI 90
           I KFW+ E++  F+ ++ ++ ++PEN+
Sbjct: 28  ISKFWSDEELVRFLAERKEAHSLPENV 54


>01_06_1483 + 37683559-37683922,37684916-37685193,37685865-37686167
          Length = 314

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -2

Query: 433 FHVSSFGRRSFAPLQCSRSFAAATGAIARLAV---PDFGNLAFS 311
           F + + GRR  AP+    +F  A  A  R AV   P F N A S
Sbjct: 68  FEIGARGRRELAPVAAGFAFFQAASAAVRAAVSRDPLFVNTAVS 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,175,877
Number of Sequences: 37544
Number of extensions: 198294
Number of successful extensions: 445
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)