Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2341
         (500 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-952|AAF54387.1|  632|Drosophila melanogaster CG9373-PA ...    34   0.094
AY122237-1|AAM52749.1|  351|Drosophila melanogaster RH74174p pro...    28   8.2  
AY118713-1|AAM50573.1|  719|Drosophila melanogaster AT25933p pro...    28   8.2  
AE014298-1445|AAN09259.1|  719|Drosophila melanogaster CG32686-P...    28   8.2  
AE014298-1444|AAN09258.1| 1082|Drosophila melanogaster CG32686-P...    28   8.2  
AE014134-1995|AAF53038.1|  351|Drosophila melanogaster CG4621-PA...    28   8.2  

>AE014297-952|AAF54387.1|  632|Drosophila melanogaster CG9373-PA
           protein.
          Length = 632

 Score = 34.3 bits (75), Expect = 0.094
 Identities = 16/27 (59%), Positives = 19/27 (70%)
 Frame = +1

Query: 418 SSKHETYGLSLNFLESLNIKLPLLNKI 498
           SS +  YGLS +FLESL I  PL NK+
Sbjct: 208 SSNYNLYGLSASFLESLGISGPLHNKV 234


>AY122237-1|AAM52749.1|  351|Drosophila melanogaster RH74174p
           protein.
          Length = 351

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
 Frame = +2

Query: 236 IIYSTRKGI*TETSLNT-----RNRELSQARKRKITKIR 337
           ++ S RK I T T++ T     R +EL  ARKRK  K+R
Sbjct: 125 VLDSGRKSIRTSTAIKTQATKIRLKELDDARKRKKKKVR 163


>AY118713-1|AAM50573.1|  719|Drosophila melanogaster AT25933p
           protein.
          Length = 719

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 297 NSVKPENARLPKSGTASRAIAPVAAANEREHCNGANERRPKLE 425
           N+    N R  ++   + A A  AAA+E E    A E  PK++
Sbjct: 412 NAPTSPNRRSRRASRKAAAAAAAAAASEEEQLKAAEEGSPKID 454


>AE014298-1445|AAN09259.1|  719|Drosophila melanogaster CG32686-PA,
           isoform A protein.
          Length = 719

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 297 NSVKPENARLPKSGTASRAIAPVAAANEREHCNGANERRPKLE 425
           N+    N R  ++   + A A  AAA+E E    A E  PK++
Sbjct: 412 NAPTSPNRRSRRASRKAAAAAAAAAASEEEQLKAAEEGSPKID 454


>AE014298-1444|AAN09258.1| 1082|Drosophila melanogaster CG32686-PB,
           isoform B protein.
          Length = 1082

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 297 NSVKPENARLPKSGTASRAIAPVAAANEREHCNGANERRPKLE 425
           N+    N R  ++   + A A  AAA+E E    A E  PK++
Sbjct: 775 NAPTSPNRRSRRASRKAAAAAAAAAASEEEQLKAAEEGSPKID 817


>AE014134-1995|AAF53038.1|  351|Drosophila melanogaster CG4621-PA
           protein.
          Length = 351

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
 Frame = +2

Query: 236 IIYSTRKGI*TETSLNT-----RNRELSQARKRKITKIR 337
           ++ S RK I T T++ T     R +EL  ARKRK  K+R
Sbjct: 125 VLDSGRKSIRTSTAIKTQATKIRLKELDDARKRKKKKVR 163


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,445,310
Number of Sequences: 53049
Number of extensions: 362984
Number of successful extensions: 925
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1784022528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)