Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2341
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74042-2|CAA98528.2|  379|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U97196-5|AAB52458.3|  368|Caenorhabditis elegans G protein, alph...    28   4.4  
U97196-4|AAP68962.2|  408|Caenorhabditis elegans G protein, alph...    28   4.4  
U53343-2|AAQ81274.1|  196|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AY008136-1|AAG32089.1|  368|Caenorhabditis elegans heterotrimeri...    28   4.4  
U10402-3|AAK95874.1|  734|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AF025454-1|AAC71152.2|  378|Caenorhabditis elegans Hypothetical ...    27   7.6  

>Z74042-2|CAA98528.2|  379|Caenorhabditis elegans Hypothetical
           protein T11F9.3 protein.
          Length = 379

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
 Frame = +1

Query: 16  KFWNAEKVKSFIQDKCKSRTIPENIKFVLLFIEDNGDPSCLVKFAN---SYICNLALMEL 186
           K W+A  V++  +   ++ T+PE   F L   E +     + K +     + C+   +EL
Sbjct: 256 KEWDASGVRNNYRKGIETNTMPEYTYFALTAPEGSTIEVRITKLSGFFCQHTCDYNGVEL 315

Query: 187 ENVEIDGKRL--FINLDTDNLFNKKRNMNRNIF 279
           +  + D + +   +  D DNL+NK R+   N F
Sbjct: 316 K-YKTDRRIVSPLVCCDNDNLWNKTRSSTNNPF 347


>U97196-5|AAB52458.3|  368|Caenorhabditis elegans G protein, alpha
           subunit protein14, isoform a protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/46 (21%), Positives = 28/46 (60%)
 Frame = +1

Query: 1   IKPIPKFWNAEKVKSFIQDKCKSRTIPENIKFVLLFIEDNGDPSCL 138
           ++P+ +FWN+++++   + +C+   + ++ K+ L  +    DP+ L
Sbjct: 125 LEPLTEFWNSKQIQEIYKRRCEFELL-DSTKYYLENLTRIADPTYL 169


>U97196-4|AAP68962.2|  408|Caenorhabditis elegans G protein, alpha
           subunit protein14, isoform b protein.
          Length = 408

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/46 (21%), Positives = 28/46 (60%)
 Frame = +1

Query: 1   IKPIPKFWNAEKVKSFIQDKCKSRTIPENIKFVLLFIEDNGDPSCL 138
           ++P+ +FWN+++++   + +C+   + ++ K+ L  +    DP+ L
Sbjct: 165 LEPLTEFWNSKQIQEIYKRRCEFELL-DSTKYYLENLTRIADPTYL 209


>U53343-2|AAQ81274.1|  196|Caenorhabditis elegans Hypothetical
           protein F22F4.5 protein.
          Length = 196

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 163 CNLALMELENVEIDGKRLFINLDTDNLFNKKRNMNRNIF 279
           C+L L + E V +D   L   L  D +F   +N   N+F
Sbjct: 69  CDLVLHDCEKVSMDSAHLAEFLGEDTVFTLGKNKEGNVF 107


>AY008136-1|AAG32089.1|  368|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/46 (21%), Positives = 28/46 (60%)
 Frame = +1

Query: 1   IKPIPKFWNAEKVKSFIQDKCKSRTIPENIKFVLLFIEDNGDPSCL 138
           ++P+ +FWN+++++   + +C+   + ++ K+ L  +    DP+ L
Sbjct: 125 LEPLTEFWNSKQIQEIYKRRCEFELL-DSTKYYLENLTRIADPTYL 169


>U10402-3|AAK95874.1|  734|Caenorhabditis elegans Hypothetical
           protein C34E10.5 protein.
          Length = 734

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 327 PKSGTASRAIAPVAAANEREH 389
           PKS + SR+I+ V AAN R H
Sbjct: 29  PKSNSPSRSISSVEAANSRIH 49


>AF025454-1|AAC71152.2|  378|Caenorhabditis elegans Hypothetical
           protein F34D6.1 protein.
          Length = 378

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 163 CNLALMELENVEIDGKRLFINLDTD 237
           C  +  EL +++IDG R+ + +DTD
Sbjct: 123 CETSFGELRDLQIDGIRMQVRVDTD 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,366,748
Number of Sequences: 27780
Number of extensions: 198334
Number of successful extensions: 492
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)