Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2340
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0444 + 3212646-3212686,3213093-3213225,3213467-3213570,321... 30 1.3
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 29 1.7
01_06_0695 - 31292622-31293317 29 1.7
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848... 29 2.2
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 28 3.9
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 28 3.9
01_01_0942 + 7428384-7429536,7429623-7430335 28 5.2
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 6.8
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 27 6.8
10_08_0113 - 14896341-14897153 27 9.0
08_02_1081 + 24215323-24215335,24215450-24215572,24216241-242164... 27 9.0
08_02_0971 - 23151055-23151930,23152024-23152290 27 9.0
07_03_0846 - 21983581-21986055 27 9.0
02_04_0550 - 23795957-23796154,23796596-23796650,23797324-237973... 27 9.0
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171... 27 9.0
>02_01_0444 +
3212646-3212686,3213093-3213225,3213467-3213570,
3214360-3214504,3214592-3214732,3214835-3216298
Length = 675
Score = 29.9 bits (64), Expect = 1.3
Identities = 29/107 (27%), Positives = 45/107 (42%)
Frame = -1
Query: 461 LNRSQHDAXLPSTTPRQERKSSTDYSEPRHRTELXPDLRSRDARVKKKTDSIDLRDPNGL 282
++R +H S TPR D R E+ P + V +DS +L G+
Sbjct: 581 IDREEHKTRTKSRTPRPRADQPADGVGERSNREVAPQ-HPPERTVSLPSDSGNL----GV 635
Query: 281 RRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSDRLASALEAFR 141
+ + +S ++P SRG V S+PD D LA+ + A R
Sbjct: 636 KPKAP--------ARSISMQPDKSRG-IVHPSMPDFDELAARISALR 673
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -1
Query: 431 PSTTPRQERKSSTDYSEPRHRTELXPDLRSRDARVKKKTDSID 303
PS TP ER S+D PR R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>01_06_0695 - 31292622-31293317
Length = 231
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = -1
Query: 479 PGAGLSLNRSQHDAXLPSTTPRQERKSSTDYSEPRHRTELXPDLR 345
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
>02_04_0179 +
20682852-20684510,20684593-20684661,20684741-20684809,
20686779-20688206
Length = 1074
Score = 29.1 bits (62), Expect = 2.2
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
Frame = -1
Query: 500 LSSSDESPGAGLSLNRSQHDAXLPSTTPRQERKSSTDYSEPRHRTELXPDLRSRDARVKK 321
L +DESP A S R PS RQ++++ D R + E P V K
Sbjct: 492 LGRADESPSAPPSPTRKLSKVKTPSQQDRQQKEAKED----RQQKEPNPTGTPSKIAVSK 547
Query: 320 KTDSIDLRDPNGL----RRRVSRFECETRLVKSHCLEPP 216
+ PN VSR E ET+ K + + P
Sbjct: 548 LEGETTQKKPNPTGTPSEMAVSRLEGETKQKKPNPIGMP 586
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 28.3 bits (60), Expect = 3.9
Identities = 20/64 (31%), Positives = 26/64 (40%)
Frame = -1
Query: 494 SSDESPGAGLSLNRSQHDAXLPSTTPRQERKSSTDYSEPRHRTELXPDLRSRDARVKKKT 315
S +SPG L R HD L KSST + R E SR +KT
Sbjct: 731 SEADSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKT 787
Query: 314 DSID 303
+S++
Sbjct: 788 ESVE 791
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 28.3 bits (60), Expect = 3.9
Identities = 22/85 (25%), Positives = 29/85 (34%)
Frame = -1
Query: 458 NRSQHDAXLPSTTPRQERKSSTDYSEPRHRTELXPDLRSRDARVKKKTDSIDLRDPNGLR 279
+RS+ A R +S D P HR P R R K D R P+
Sbjct: 501 SRSRSPAEHQRRDVRNRLRSGRDGGGPDHRNSSPPVNRGRSRSRSKSRDPSKSRSPDAPA 560
Query: 278 RRVSRFECETRLVKSHCLEPPDSRG 204
++ S R S P S+G
Sbjct: 561 KKGSSKYNRRRSSSSRSSSPAGSKG 585
>01_01_0942 + 7428384-7429536,7429623-7430335
Length = 621
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 397 DDFRSWRGVVLGRXASCCDLLRLSPAPGDSSEDD 498
DD +W L +C D L+ A GD+ +DD
Sbjct: 186 DDIMTWLSAALTSHDTCMDSLQEVGAGGDAGDDD 219
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 182 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 286
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -1
Query: 428 STTPRQERKSSTDYSEPRHRTELXPDLRSRDARVKKKTDS-IDLRDPNGLRR 276
S +PR+ R YS R R+ RD+R ++++ S D R P G R
Sbjct: 143 SPSPRRGRSRGRSYSRSRSRSYSRSQSPRRDSRNERRSRSPRDSRSPRGSPR 194
>10_08_0113 - 14896341-14897153
Length = 270
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Frame = +3
Query: 363 LSSMSGLGIVCRRL----PFLAGCCAR 431
L++++GLGI RR P LAGCC R
Sbjct: 181 LAAIAGLGIPWRRSWPSPPSLAGCCCR 207
>08_02_1081 +
24215323-24215335,24215450-24215572,24216241-24216489,
24218517-24218720,24218864-24218993,24219610-24219679,
24219766-24219900,24219996-24220209,24220314-24220455,
24220630-24220851,24220997-24221195
Length = 566
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 214 SGGSKQCDFTSRVSHSKRETRRRSPFGSRRSML 312
S G+ Q T R HS E RRRS R +L
Sbjct: 212 SAGTDQMPNTPRSKHSATEQRRRSKINDRFQLL 244
>08_02_0971 - 23151055-23151930,23152024-23152290
Length = 380
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 500 LSSSDESPGAGLSLNRSQHDAXLPSTTPRQERKSSTDYSEPR 375
LSS+DE +G S RS P T+P +R ++SE R
Sbjct: 333 LSSADEQTSSGASRKRSPPQEQ-PPTSPAPKRTLVVEHSELR 373
>07_03_0846 - 21983581-21986055
Length = 824
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 305 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSDRLASA 156
DL+D G +R +C+T S PD S VS+ LPD+ + A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>02_04_0550 -
23795957-23796154,23796596-23796650,23797324-23797376,
23797453-23797529,23797613-23797736,23797848-23797964,
23798439-23798547,23798724-23798829,23799043-23799106,
23799214-23799333
Length = 340
Score = 27.1 bits (57), Expect = 9.0
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -1
Query: 266 RFECETRLVKSHCLEPPDSRGSTVSISLP---DSDRLASALEAFRHNPADG 123
R CE +LV HCL D+ + + P D D +ASA + +HNP G
Sbjct: 281 RETCE-KLV-GHCLHSNDNATAILVKFKPIEEDPDEVASARDEHQHNPEGG 329
>01_07_0124 +
41212728-41212922,41215156-41215210,41215336-41217128,
41217363-41217521,41217883-41218054,41218173-41218471,
41219060-41219368
Length = 993
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = -1
Query: 323 KKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSDRLASALEAF 144
KKT ++ + P+ R + + + +V S C D G+ ++ + R+ASA++AF
Sbjct: 566 KKTMAVVIASPSAGGRPRAFLKGASEVVLSRCSLVLDGTGNVEKLTDAKAKRVASAIDAF 625
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,710,581
Number of Sequences: 37544
Number of extensions: 284947
Number of successful extensions: 808
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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