Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2340
(518 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82286-5|CAB05311.1| 130|Caenorhabditis elegans Hypothetical pr... 30 1.1
AF142441-1|AAF66614.1| 701|Caenorhabditis elegans H+/oligopepti... 29 2.0
AF003146-1|AAB54202.1| 701|Caenorhabditis elegans Oligopeptide ... 29 2.0
L37867-1|AAA63155.1| 319|Caenorhabditis elegans homeodomain pro... 29 2.6
Z93376-2|CAD59146.2| 578|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z82279-4|CAD59150.2| 578|Caenorhabditis elegans Hypothetical pr... 28 4.6
U53139-1|AAS80341.1| 90|Caenorhabditis elegans Hypothetical pr... 28 4.6
AL132949-42|CAD59173.2| 578|Caenorhabditis elegans Hypothetical... 28 4.6
AF106581-5|AAC78210.1| 588|Caenorhabditis elegans Hypothetical ... 27 6.1
Z49071-5|CAA88879.1| 609|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical pr... 27 8.0
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 27 8.0
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 27 8.0
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 27 8.0
AF000265-12|ABQ13076.1| 302|Caenorhabditis elegans Hypothetical... 27 8.0
AF000265-11|AAK68199.1| 298|Caenorhabditis elegans Hypothetical... 27 8.0
>Z82286-5|CAB05311.1| 130|Caenorhabditis elegans Hypothetical
protein W02A2.8 protein.
Length = 130
Score = 29.9 bits (64), Expect = 1.1
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = +3
Query: 45 YCSXRXEPQFRTFGSCTRPXGRW------CEATIRGIMPERL*XRSQPIRIRQGYAHCGA 206
YC R P+ RT SC P R+ CE + G MPE S+ I +++G A A
Sbjct: 56 YCHLRI-PKSRTSRSCPDPWRRYGAHVKLCE--VGGWMPENRNKNSKVIVVKKGSAPPAA 112
Query: 207 PRVGRL*TM 233
PR L T+
Sbjct: 113 PRCKPLMTV 121
>AF142441-1|AAF66614.1| 701|Caenorhabditis elegans H+/oligopeptide
symporter OPT-3 protein.
Length = 701
Score = 29.1 bits (62), Expect = 2.0
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Frame = -1
Query: 479 PGAG-LSLNRSQHDAXLPSTTPRQERKSSTDYSEPRHRTELXPDLRSRDARVKKKTDSID 303
P G + L R +++ + + + + D P+ RTEL + + + +K ++ ID
Sbjct: 379 PSLGRIYLQRVGNESLISDFRYKSDGRLIGDGMLPKGRTELDAGIYTFNTGLKNESQEID 438
Query: 302 LRDPN-GLRRRVSRFECETRLVK-SHCLEPPDSRGSTVSI--SLPDSDRLASAL 153
+ PN G V R + +VK + +E D+ + V + + D+D L A+
Sbjct: 439 ISTPNKGYVMAVFRLKDAVEVVKFDYKVEKTDNGATRVFVVTAREDADTLVYAI 492
>AF003146-1|AAB54202.1| 701|Caenorhabditis elegans Oligopeptide
transporter protein 3 protein.
Length = 701
Score = 29.1 bits (62), Expect = 2.0
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Frame = -1
Query: 479 PGAG-LSLNRSQHDAXLPSTTPRQERKSSTDYSEPRHRTELXPDLRSRDARVKKKTDSID 303
P G + L R +++ + + + + D P+ RTEL + + + +K ++ ID
Sbjct: 379 PSLGRIYLQRVGNESLISDFRYKSDGRLIGDGMLPKGRTELDAGIYTFNTGLKNESQEID 438
Query: 302 LRDPN-GLRRRVSRFECETRLVK-SHCLEPPDSRGSTVSI--SLPDSDRLASAL 153
+ PN G V R + +VK + +E D+ + V + + D+D L A+
Sbjct: 439 ISTPNKGYVMAVFRLKDAVEVVKFDYKVEKTDNGATRVFVVTAREDADTLVYAI 492
>L37867-1|AAA63155.1| 319|Caenorhabditis elegans homeodomain
protein protein.
Length = 319
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -1
Query: 185 LPDSDRLASALEAFRHNPADGSFXXXXXXXXX*TKCPKLRFLS 57
LPD D ++S+L HNP ++ TK PKL LS
Sbjct: 37 LPD-DSISSSLAPLTHNPYAFNYSIPLPPTDITTKLPKLELLS 78
>Z93376-2|CAD59146.2| 578|Caenorhabditis elegans Hypothetical
protein E01F3.1b protein.
Length = 578
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +2
Query: 146 TPLXPKPAYPNPARICSLWSPESREALNN---VTLLVAFRIQNARRDVEAHLD 295
T L PA PN AR S W E+ + NN + + +I +R++ H+D
Sbjct: 119 TGLPTVPAEPNKARSSSYWKTEASPSNNNEHETPVDLLRKISVSRKESGTHVD 171
>Z82279-4|CAD59150.2| 578|Caenorhabditis elegans Hypothetical
protein E01F3.1b protein.
Length = 578
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +2
Query: 146 TPLXPKPAYPNPARICSLWSPESREALNN---VTLLVAFRIQNARRDVEAHLD 295
T L PA PN AR S W E+ + NN + + +I +R++ H+D
Sbjct: 119 TGLPTVPAEPNKARSSSYWKTEASPSNNNEHETPVDLLRKISVSRKESGTHVD 171
>U53139-1|AAS80341.1| 90|Caenorhabditis elegans Hypothetical
protein F18E3.11 protein.
Length = 90
Score = 27.9 bits (59), Expect = 4.6
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -1
Query: 428 STTPRQERKSSTDYSEPRHRTELXPDLRSRDARVKKKTDSIDLRDPNGLRRRVS 267
STT RKSST PRH + + ++ + S L D N L+R+ S
Sbjct: 30 STTQVVSRKSSTSSDAPRHSLNITVG-EAEMCQITRNNSSNSLNDFNCLQRKNS 82
>AL132949-42|CAD59173.2| 578|Caenorhabditis elegans Hypothetical
protein E01F3.1b protein.
Length = 578
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +2
Query: 146 TPLXPKPAYPNPARICSLWSPESREALNN---VTLLVAFRIQNARRDVEAHLD 295
T L PA PN AR S W E+ + NN + + +I +R++ H+D
Sbjct: 119 TGLPTVPAEPNKARSSSYWKTEASPSNNNEHETPVDLLRKISVSRKESGTHVD 171
>AF106581-5|AAC78210.1| 588|Caenorhabditis elegans Hypothetical
protein VC5.2 protein.
Length = 588
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 286 PFGSRRSMLSVFFLTRASRLRRSGXNSVRCRGSE*SVDDFRSWR 417
P R+ +LS FF ++ SR+RRS + R D SW+
Sbjct: 150 PEKRRQELLSEFFASKPSRVRRSTMSRKIAREPTPLTPDMLSWQ 193
>Z49071-5|CAA88879.1| 609|Caenorhabditis elegans Hypothetical
protein T22C8.7 protein.
Length = 609
Score = 27.1 bits (57), Expect = 8.0
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -2
Query: 493 PRTNHLAQG*VSTDRSTTLXYRAQHPARNGSRLQTIPSPDIELSXVR 353
PRT + ++G +T RSTT RAQ A + + +T S ++L V+
Sbjct: 311 PRTENTSEGSTTTVRSTTTRERAQ--AFSTTTHKTTTSSSLQLKTVQ 355
>Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical
protein R08D7.1 protein.
Length = 458
Score = 27.1 bits (57), Expect = 8.0
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Frame = -1
Query: 497 SSSDESPGAGLSLNRSQHDAXLPSTTPRQERKSSTDYSEPRHRTEL---XPDLRSRDA-- 333
+ SD SP +R++HD+ ++ PR+ R S D S PR ++ P R+R +
Sbjct: 126 NDSDNSPPRP---SRNRHDSDKDNSPPRRRRHDS-DNSPPRPSRKIREESPSARNRRSPP 181
Query: 332 RVKKKTDSIDLRDPNGLRRRVS 267
R ++ D P RR S
Sbjct: 182 RTRRDRHDSDNSPPRNRSRRDS 203
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 27.1 bits (57), Expect = 8.0
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Frame = +2
Query: 182 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEAHLDRGDRCYRFFS*HVHHG------ 343
A++ +W E A + LV A+ DVEA L +GDR + ++ G
Sbjct: 1288 AKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAAL-KGDRPFMIYTDASRKGIGAVLA 1346
Query: 344 SEGPDXTQFDV 376
EGPD Q +
Sbjct: 1347 QEGPDGQQHPI 1357
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 27.1 bits (57), Expect = 8.0
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Frame = +2
Query: 182 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEAHLDRGDRCYRFFS*HVHHG------ 343
A++ +W E A + LV A+ DVEA L +GDR + ++ G
Sbjct: 1191 AKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAAL-KGDRPFMIYTDASRKGIGAVLA 1249
Query: 344 SEGPDXTQFDV 376
EGPD Q +
Sbjct: 1250 QEGPDGQQHPI 1260
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 27.1 bits (57), Expect = 8.0
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Frame = +2
Query: 182 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEAHLDRGDRCYRFFS*HVHHG------ 343
A++ +W E A + LV A+ DVEA L +GDR + ++ G
Sbjct: 1202 AKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAAL-KGDRPFMIYTDASRKGIGAVLA 1260
Query: 344 SEGPDXTQFDV 376
EGPD Q +
Sbjct: 1261 QEGPDGQQHPI 1271
>AF000265-12|ABQ13076.1| 302|Caenorhabditis elegans Hypothetical
protein C18E3.9b protein.
Length = 302
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1
Query: 500 LSSSDESPGAGLSLNRSQHDAXLPSTTPRQERKSSTDYSEPRH 372
++ S +SPGA S ++ D PSTT R+ S D + +H
Sbjct: 139 ITDSSQSPGASPSSDQIFIDDSQPSTTKRRWVISEPDDNSDKH 181
>AF000265-11|AAK68199.1| 298|Caenorhabditis elegans Hypothetical
protein C18E3.9a protein.
Length = 298
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1
Query: 500 LSSSDESPGAGLSLNRSQHDAXLPSTTPRQERKSSTDYSEPRH 372
++ S +SPGA S ++ D PSTT R+ S D + +H
Sbjct: 139 ITDSSQSPGASPSSDQIFIDDSQPSTTKRRWVISEPDDNSDKH 181
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,963,087
Number of Sequences: 27780
Number of extensions: 217685
Number of successful extensions: 632
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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