Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2338
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055... 86 2e-17
03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,205... 56 2e-08
05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182... 42 4e-04
01_06_0491 - 29763738-29764044,29764266-29764474,29764565-297646... 41 7e-04
03_02_0058 - 5316112-5316418,5316497-5316705,5316773-5316859,531... 35 0.049
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 30 1.4
08_02_1207 - 25302186-25302275,25303089-25303141,25303400-253037... 29 2.4
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306... 28 7.4
05_03_0373 - 13194723-13195847,13196219-13196809 28 7.4
11_06_0513 + 24466131-24469487 27 9.8
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 27 9.8
>01_05_0521 -
22904656-22904962,22905132-22905340,22905432-22905521,
22905624-22905734,22906401-22906468,22906611-22906653
Length = 275
Score = 86.2 bits (204), Expect = 2e-17
Identities = 59/188 (31%), Positives = 95/188 (50%)
Frame = +2
Query: 83 MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSK 262
MAP Y D+GKK D+ + Y K L T + GV T+ T ES VFG L ++
Sbjct: 1 MAPGLYTDIGKKTRDLLYRDYGTH-HKFTLTTCTPEGVTITAAGTRKNES--VFGELQTQ 57
Query: 263 FAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTND 442
+K+ LT K N+++ L T +T+ + GLK L Q ++GKL+ + ++
Sbjct: 58 --LKNKKLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQ---RSGKLELQYLHE 112
Query: 443 TVAVNTNLDLDLAGPVVDVAAVLNYQXWLAGVHTQFDTQKAKFSKNNFALSYQSGDFALH 622
+N ++ L+ + P+V+++ V + GV FDT + F+K N ALS + D
Sbjct: 113 YAGINASVGLN-SNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLIAS 171
Query: 623 TNVNNGKD 646
++NN D
Sbjct: 172 LHLNNHGD 179
>03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,
2053164-2053250,2053476-2053684,2054115-2054340,
2054473-2054510,2054657-2054714,2055363-2055662,
2055832-2055903,2055988-2056112,2056240-2056312,
2056417-2056521
Length = 1218
Score = 56.4 bits (130), Expect = 2e-08
Identities = 44/164 (26%), Positives = 78/164 (47%)
Frame = +2
Query: 125 DVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKW 304
D+ K Y+F K L T S SG+ T+ T + G + ++ K T K
Sbjct: 729 DLLYKDYNFDQ-KFSLTTTSNSGLGLTA--TGVKIDELFIGDIQTQH--KSGKTTVDVKI 783
Query: 305 NTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAG 484
++++ ++T +T+ D+ GLK + Q K+GKL + +D A+N+ + L +
Sbjct: 784 DSESRVSTTVTV-DEALTGLKTSFSFRVPDQ---KSGKLDLQYLHDHFALNSTIGLT-ST 838
Query: 485 PVVDVAAVLNYQXWLAGVHTQFDTQKAKFSKNNFALSYQSGDFA 616
P++++AA + AG FD+ A +K N + Y DF+
Sbjct: 839 PLIELAATIGTNELSAGAEVGFDSTSASVTKYNSGICYNKHDFS 882
>05_06_0213 +
26414613-26414695,26416907-26417077,26417983-26418219,
26418543-26418572,26419248-26419282,26421680-26421747,
26423067-26423126,26423310-26423399,26423487-26423695,
26424083-26424383
Length = 427
Score = 41.9 bits (94), Expect = 4e-04
Identities = 31/109 (28%), Positives = 46/109 (42%)
Frame = +2
Query: 320 LATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDV 499
L T T+ D GLK L F Q K+ K + + + +N + L+ A P+V
Sbjct: 229 LITTFTVHDLGTPGLKGILSIPFPYQ---KSAKAEVQYLHPHAGLNAIVGLN-ANPLVSF 284
Query: 500 AAVLNYQXWLAGVHTQFDTQKAKFSKNNFALSYQSGDFALHTNVNNGKD 646
+ V + G FDT F+K N LS+ + D +NN D
Sbjct: 285 SGVFGTGAFAVGTDVAFDTATGDFTKYNAGLSHTTPDLTAALLLNNKGD 333
>01_06_0491 -
29763738-29764044,29764266-29764474,29764565-29764654,
29764819-29764905,29765598-29765733,29766036-29766186,
29766334-29766502
Length = 382
Score = 41.1 bits (92), Expect = 7e-04
Identities = 28/107 (26%), Positives = 48/107 (44%)
Frame = +2
Query: 326 TDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAA 505
T IT +D +GLK + F QT GK + + +D ++ + L + P+V+++
Sbjct: 184 TTITTEDLGVSGLKQIVSLPFPYQTA---GKAELQYLHDYAGISLGVGLT-SKPLVNLSG 239
Query: 506 VLNYQXWLAGVHTQFDTQKAKFSKNNFALSYQSGDFALHTNVNNGKD 646
V + G DT F+K + L+ + D A +NN D
Sbjct: 240 VFGNKSVAVGADVAVDTSTGDFTKYDAGLTINNSDLAADLTLNNKGD 286
>03_02_0058 -
5316112-5316418,5316497-5316705,5316773-5316859,
5316945-5317055,5317536-5317643,5319082-5319149,
5319269-5319320
Length = 313
Score = 35.1 bits (77), Expect = 0.049
Identities = 35/161 (21%), Positives = 69/161 (42%), Gaps = 1/161 (0%)
Frame = +2
Query: 134 SKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTE-KWNT 310
S ++F V K + G + T+ ++ G +SS + K T + K +T
Sbjct: 54 SSSFYFQVIKAVKNISMQIGGDRGLTSTAVKKGGLYTLDVSSVYKYKS---TLVDVKVDT 110
Query: 311 DNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPV 490
++ ++T +T+ D + + VT P + GK++ + ++ + T + + PV
Sbjct: 111 ESNISTTLTVFDVLPSTKLVT--SVKLPDYNS--GKVEMQYFHENASFATAVGMK-PSPV 165
Query: 491 VDVAAVLNYQXWLAGVHTQFDTQKAKFSKNNFALSYQSGDF 613
V+ + Q G FDT KF+K + A+ D+
Sbjct: 166 VEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAAIGVTKPDY 206
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 30.3 bits (65), Expect = 1.4
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +2
Query: 92 PYYADLGKKANDVFSKGYHFGVFKLDLKTKS--ESGVEFTSGITSNQESGKVFGSLSSKF 265
P Y G + D+ SK +H LDL S + G++F SG+ S + V L+ +
Sbjct: 261 PQYVH-GTQLPDLESKFFH-----LDLMHPSVYKVGLQFLSGVISGGNACCVAMLLAFRE 314
Query: 266 AVKDYGLTFTEKWNTDNT 319
A+KDY T+ N D T
Sbjct: 315 AIKDYSTPSTKTLNRDLT 332
>08_02_1207 -
25302186-25302275,25303089-25303141,25303400-25303788,
25303968-25304338,25304362-25304502
Length = 347
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 581 CSWRTLLFVYQTGCVHQPANXGSLVLLQRLQLD 483
CSW + + TG V P+ G L LLQ +QL+
Sbjct: 34 CSWDSGIICSDTGHVPIPSALGDLPLLQTIQLE 66
>09_02_0022 +
3065644-3065953,3066048-3067162,3067261-3067437,
3067535-3067648,3068614-3068718,3068930-3069064,
3069148-3069203,3069277-3069382,3069515-3069631,
3069705-3069831,3069915-3070141,3070164-3070727
Length = 1050
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 432 NEVFNFPVL-VPVCGAKVPSRVTLRPAAILSWIVMSVANVLSVF 304
++V + VL + C + SR+ L PA+ LSW S LS F
Sbjct: 606 DQVLDVKVLKISECAQSLSSRLVLTPASKLSWFGFSENGELSSF 649
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 380 GTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDL 478
GT+ Q T TGK+ +FT + + LDLD+
Sbjct: 537 GTYVAQVTTATGKMLKTFTVEKGDNSLELDLDI 569
>11_06_0513 + 24466131-24469487
Length = 1118
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = -1
Query: 638 HCLR*CXEQSHQIGNLEQS-CSWRTLLFVYQTGC---VHQPANXGSLVLLQRLQLD 483
H LR IG L S CS R L + + C P N GS+ LQRL L+
Sbjct: 686 HSLRYLNLSQTDIGKLPDSICSLRLLQTLQLSRCEKLTKLPQNIGSVTSLQRLDLE 741
>03_01_0005 +
46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -1
Query: 569 TLLFVYQTGCVHQPANXGSLVLL 501
TLLFVYQTG P G L+LL
Sbjct: 693 TLLFVYQTGEDPPPPAPGGLLLL 715
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,673,485
Number of Sequences: 37544
Number of extensions: 331003
Number of successful extensions: 832
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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