Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2337
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0476 + 34199577-34199638,34200267-34200397,34200535-342006...    29   2.7  
06_03_0592 + 22585546-22588573,22588680-22589032                       29   4.7  
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707...    28   8.2  
03_02_0268 - 6994095-6994555,6996873-6996982,6997237-6998612           28   8.2  

>03_06_0476 +
           34199577-34199638,34200267-34200397,34200535-34200698,
           34201007-34201117,34201308-34201387,34201489-34201639,
           34201736-34201829,34202421-34202509,34203672-34203745,
           34203859-34204021,34204445-34204530,34205011-34205094,
           34205186-34205366,34205837-34205887
          Length = 506

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
 Frame = +1

Query: 85  FSQITAVVTSQCTKNNA---ED---KVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPN 246
           FSQ T V+ +Q  + +    +D   K   V  A R++G  L GLV ++V +  + E+KP+
Sbjct: 109 FSQFTVVIATQLPERSLLKLDDICRKANIVLVAARSYG--LTGLVRISVKEHNVIESKPD 166

Query: 247 GALDEV 264
             LD++
Sbjct: 167 HFLDDL 172


>06_03_0592 + 22585546-22588573,22588680-22589032
          Length = 1126

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/81 (22%), Positives = 35/81 (43%)
 Frame = +1

Query: 22  VTMMWKTVLITIFAAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLV 201
           VT+ +  +    F  G+    F ++ ++     ++NN   K+P+       F N L  L 
Sbjct: 656 VTLEYLEIQSNFFVGGI-PQSFMKLVSIKEMDISRNNLSGKIPQ-------FLNLLSSLH 707

Query: 202 DLNVLKTEIEEAKPNGALDEV 264
           DLN+     +   P G + ++
Sbjct: 708 DLNLSFNNFDGVIPTGGVFDI 728


>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
            27771407-27771773,27772104-27772217,27772307-27772403,
            27772968-27773088,27773168-27773252,27773349-27773498,
            27773630-27773746,27773819-27773905,27773981-27774049,
            27774125-27774181,27774266-27774349,27774477-27774513,
            27774721-27774869,27776053-27776538,27776743-27776886,
            27776961-27777509,27778332-27778526,27779226-27779310,
            27779570-27779670,27779689-27780360,27781101-27781433,
            27781957-27782038,27782258-27782334,27782713-27782817,
            27783810-27783944,27784437-27785159,27785882-27786663,
            27787480-27789187
          Length = 2891

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 73   LADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVD 204
            +AD   QI+A V  + T   A +    V+ A  ++G+C+  L +
Sbjct: 1320 MADSNGQISAAVMERLTSAAAAEPYESVKHAFVSYGSCIADLAE 1363


>03_02_0268 - 6994095-6994555,6996873-6996982,6997237-6998612
          Length = 648

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 421 GDRIALFIAEG-GPECXQQKTENLKTCFLN 507
           G ++ L I  G GPE  QQ +E LK C +N
Sbjct: 413 GAKLLLVIQSGCGPELKQQASELLKLCTMN 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,061,030
Number of Sequences: 37544
Number of extensions: 351223
Number of successful extensions: 901
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)