Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2336
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.1  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    28   1.5  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    28   1.5  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    28   1.5  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    27   2.6  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    27   2.6  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    27   3.4  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    26   6.0  
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    25   7.9  

>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = -3

Query: 440 HALDSLPVT*LVNRLLWLQTYKQTEISFN*IVSVALFVPSSRTDFLSGVNCLNWSSCRNN 261
           H  DSLP   L + LL L TY+Q  I    I  +   +PS ++   S     +    + N
Sbjct: 200 HKRDSLPTAVLCHLLLRLSTYQQISIIKRLITLIDKAIPSWKSR-SSDSKYNDHQFVKKN 258

Query: 260 FFAI 249
           FF+I
Sbjct: 259 FFSI 262


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 72  LVCVPCNRKFSSIATFKQHMKMSMKH 149
           L+CV C RKF S     +H+  S+ H
Sbjct: 404 LICVLCERKFQSWGHVVKHITQSIMH 429


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 199 CTFVKFSYAHLKSFSEMCFMLIFMCCLNVA 110
           C F  FSYA L+S+      L+  CC  +A
Sbjct: 212 CLFTPFSYAILRSYIWRFAALLTSCCRRIA 241


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -1

Query: 610  LDWRVGQPLHNGTSNFDLMSRCGR*ELGCHKYGLRYLLTTRCALSLPTYLN 458
            LD  + Q + +  +N+ +   CG  EL  H    +YL+  + A +LP  L+
Sbjct: 1199 LDGSIVQAVDSAITNYAIDLHCGISELLIHLSQAQYLILLKLASNLPEMLS 1249


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +3

Query: 375 FVSLQP*ESVNELSNRETV*RVNMKSI*FKYVGKLKAHLVVSRYRSP 515
           + +LQP  + NEL  +E   + + K++ F Y  KL  H++   + SP
Sbjct: 25  YSALQP--NQNELRKKELFIKNDGKALSFPYDWKLATHVICDDFSSP 69


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 512 PIFMTAQFLSPTSRHKIEVRSSIMQWLPHPPIQEMG 619
           P+     FLSPTS   I+   S+++W+    +++ G
Sbjct: 252 PLPFPILFLSPTSTKTIDYAKSMIEWMGDNIVRDFG 287


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 78  CVPCNRKFSSIATFKQHMKMSMK-HISENDF 167
           C+ C   FSS  T K+HMK S   +I E ++
Sbjct: 210 CLFCAASFSSFDTCKKHMKASHSLYIPEREY 240



 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 78  CVPCNRKFSSIATFKQHMK 134
           C+ CNR+F S+   + HM+
Sbjct: 261 CLTCNREFKSLEAVRAHMQ 279


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -3

Query: 446 HIHALDSLPVT*LVNRLLWLQTYKQTEISFN*IVSV-ALFVPSSRTDFLSGVNCLNWSS 273
           H++  DSLP   L+NR+    T   +   F   VS+    V  S  +FL    CL WS+
Sbjct: 335 HLYYPDSLPAPLLLNRVCEFPTVWTSATVFYLAVSIPKSIVLESPMEFL----CLTWST 389


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 196 TFVKFSYAHLKSFSEMCF 143
           TF+K ++ HLKS   +CF
Sbjct: 15  TFIKRAFQHLKSLFTVCF 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,996,151
Number of Sequences: 5004
Number of extensions: 63204
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)