Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2336
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0454 + 19199063-19200757,19202201-19202287                       31   1.2  
04_03_0698 + 18812055-18812345                                         29   3.5  
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...    28   6.2  
05_04_0124 + 18232961-18236636,18236810-18237288,18237549-182376...    28   6.2  
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032...    28   6.2  
11_06_0258 + 21750922-21752272,21752971-21753377                       28   8.2  
09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199...    28   8.2  
03_04_0117 + 17411064-17411955,17412111-17413543                       28   8.2  

>12_02_0454 + 19199063-19200757,19202201-19202287
          Length = 593

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 51  QARANGNLVCVPCNRKFSSIATFKQHMKMSMKH 149
           +A+    L CV CN+KF S   +K H + S KH
Sbjct: 303 RAKRKEELYCVACNKKFKSDKQWKNH-EQSKKH 334


>04_03_0698 + 18812055-18812345
          Length = 96

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 675 SLDYDL*GCELDRVCTTFPP-ISWIGGWGSHCI 580
           +LD D   C  D  CT  PP +S+I GWG  C+
Sbjct: 59  ALDKDKPVCLRDHSCTEPPPGVSYI-GWGDKCV 90


>08_02_1442 +
           27120604-27120890,27121029-27121166,27121280-27121382,
           27121877-27122036,27122927-27123114,27123203-27124770,
           27124882-27125869,27126595-27127098,27127347-27127433,
           27127753-27127821,27128012-27128041
          Length = 1373

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 196 TFVKFSYAHLKSFSEMCFMLIFMCCLNVAMDENFLL 89
           + +K SY HL S  + CF    + C +  M+++ L+
Sbjct: 647 SILKLSYKHLPSEMKQCFTFCAIFCKDYEMEKDMLI 682


>05_04_0124 +
           18232961-18236636,18236810-18237288,18237549-18237629,
           18238033-18238041,18238096-18238248
          Length = 1465

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 196 TFVKFSYAHLKSFSEMCFMLIFMCCLNVAMDENFLLH 86
           T +  SY HL SF + CF    +   +  +D++ L+H
Sbjct: 398 TVLSLSYKHLPSFMKQCFAFCAVFPKDYEIDKDDLIH 434


>05_04_0122 +
           18198594-18202269,18202551-18202591,18203273-18203281,
           18203336-18203551,18204257-18204361,18204761-18204919
          Length = 1401

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 196 TFVKFSYAHLKSFSEMCFMLIFMCCLNVAMDENFLLH 86
           T +  SY HL SF + CF    +   +  +D++ L+H
Sbjct: 398 TVLSLSYKHLPSFMKQCFAFCAVFPKDYEIDKDDLIH 434


>11_06_0258 + 21750922-21752272,21752971-21753377
          Length = 585

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = -2

Query: 651 CELDRVCTTFPPISWIGGWGSHCIMELRTSILC----LDVGDRNWAVINMGSGTYL 496
           C  DR   +F P +  G   + C++ L    +C       GD  W  ++ G+GT L
Sbjct: 182 CMYDRAVLSFGPRTRAGDAAAACVVLLLHKPMCELSYARPGDERWTWVSPGAGTGL 237


>09_04_0560 -
           18519024-18519145,18519330-18519435,18519671-18519907,
           18521371-18521810,18523215-18525012
          Length = 900

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -3

Query: 173 SLKIVFGDVFHAHFHVLFERGYG*ELSITRDAHQITVRSCLVTLHVPQE 27
           S+   +GD   A    L +RGYG +L +     Q+   + L  L +P +
Sbjct: 93  SMHAAWGDTVGAVLAHLADRGYGRDLRLVYAGRQLAPETALADLRLPPD 141


>03_04_0117 + 17411064-17411955,17412111-17413543
          Length = 774

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 382 LTNKQKFHLTKLFQLHYLSLR 320
           L N+Q  H+  LF L YLSLR
Sbjct: 548 LRNRQHHHICALFHLKYLSLR 568


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,737,047
Number of Sequences: 37544
Number of extensions: 425725
Number of successful extensions: 910
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)