Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2336
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40414-1|AAA81404.2| 543|Caenorhabditis elegans Hypothetical pr... 32 0.34
Z92834-1|CAB07382.1| 564|Caenorhabditis elegans Hypothetical pr... 32 0.45
Z81588-3|CAB04715.2| 377|Caenorhabditis elegans Hypothetical pr... 30 1.4
AF016437-1|AAB65884.2| 690|Caenorhabditis elegans Hypothetical ... 30 1.8
Z71266-8|CAA95846.2| 729|Caenorhabditis elegans Hypothetical pr... 29 4.2
U61955-7|AAV58862.1| 456|Caenorhabditis elegans Hypothetical pr... 29 4.2
U61955-6|AAC24408.2| 505|Caenorhabditis elegans Hypothetical pr... 29 4.2
U41542-2|AAR30212.1| 623|Caenorhabditis elegans Suppressor of p... 28 5.6
U41542-1|AAR30211.1| 684|Caenorhabditis elegans Suppressor of p... 28 5.6
U23529-3|AAY86217.1| 246|Caenorhabditis elegans Hypothetical pr... 27 9.8
>U40414-1|AAA81404.2| 543|Caenorhabditis elegans Hypothetical
protein F53B3.1 protein.
Length = 543
Score = 32.3 bits (70), Expect = 0.34
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +3
Query: 27 LLRHMKSHQARANGNLVCVPCNRKFSSIATFKQHMKMSMKHISENDFK 170
LL H K AN C CN KF + ++H KMS H+ F+
Sbjct: 398 LLNHRKKFHRGANSGFRCSFCNMKFLTPRKLRKHKKMS--HVFTKTFQ 443
>Z92834-1|CAB07382.1| 564|Caenorhabditis elegans Hypothetical
protein F39B2.1 protein.
Length = 564
Score = 31.9 bits (69), Expect = 0.45
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 6 KFLWRGNLLRHMKSHQARANGN-LVCVPCNRKFSSIATFKQHM 131
KF W+ L++HMK H N + C C+R +++ +H+
Sbjct: 448 KFKWKKQLMKHMKEHDENFNPSPYTCHLCDRTYTTGFALGRHL 490
>Z81588-3|CAB04715.2| 377|Caenorhabditis elegans Hypothetical
protein T07D10.3 protein.
Length = 377
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 30 LRHMKSHQARANGNLVCVPCNRKFSSIATFKQHM 131
LR+ + + RA G VC C R+F F+ H+
Sbjct: 225 LRYQEKQEERAYGLYVCTTCQRRFRDNKGFQSHV 258
>AF016437-1|AAB65884.2| 690|Caenorhabditis elegans Hypothetical
protein F13H6.1 protein.
Length = 690
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 27 LLRHMKSHQARANGNLVCVPCNRKFSSIATFKQHMK 134
L RHM++H + C C FS +T ++HM+
Sbjct: 537 LTRHMRTHGQQGKETYHCYICRMPFSVHSTLEKHMR 572
>Z71266-8|CAA95846.2| 729|Caenorhabditis elegans Hypothetical
protein R06C7.9 protein.
Length = 729
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 24 NLLRHMKSHQARANGNLVCVPCNRKFSSIATFKQHMKM 137
+LL H K L C C +KF+++++ ++HM M
Sbjct: 479 SLLHHRKQIHG-LTAMLTCGVCTKKFNTLSSIRRHMSM 515
>U61955-7|AAV58862.1| 456|Caenorhabditis elegans Hypothetical
protein M03D4.4b protein.
Length = 456
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 9 FLWRGNLLRHMKSHQARANGNLVCVPCNRKF-SSIATFKQHMKMSMK 146
F+++ +L RHMK HQ R C C R F + + H+K K
Sbjct: 132 FIFKFDLNRHMKIHQER---GFSCQQCGRSFLKQVMLDEHHLKCKGK 175
>U61955-6|AAC24408.2| 505|Caenorhabditis elegans Hypothetical
protein M03D4.4a protein.
Length = 505
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 9 FLWRGNLLRHMKSHQARANGNLVCVPCNRKF-SSIATFKQHMKMSMK 146
F+++ +L RHMK HQ R C C R F + + H+K K
Sbjct: 181 FIFKFDLNRHMKIHQER---GFSCQQCGRSFLKQVMLDEHHLKCKGK 224
>U41542-2|AAR30212.1| 623|Caenorhabditis elegans Suppressor of
presenilin defectprotein 3, isoform b protein.
Length = 623
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 24 NLLRHMKSHQARANGNLVCVPCNRKFSSIATFKQHMKMSMKHISENDFK 170
+L RH + H ++ + C+ C+ SS H+KM K + E D +
Sbjct: 275 SLWRHFRHHIQKSKQSWTCIACSYSSSSRVKIDLHVKMH-KEMPEIDLE 322
>U41542-1|AAR30211.1| 684|Caenorhabditis elegans Suppressor of
presenilin defectprotein 3, isoform a protein.
Length = 684
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 24 NLLRHMKSHQARANGNLVCVPCNRKFSSIATFKQHMKMSMKHISENDFK 170
+L RH + H ++ + C+ C+ SS H+KM K + E D +
Sbjct: 275 SLWRHFRHHIQKSKQSWTCIACSYSSSSRVKIDLHVKMH-KEMPEIDLE 322
>U23529-3|AAY86217.1| 246|Caenorhabditis elegans Hypothetical
protein C15B12.9 protein.
Length = 246
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = -2
Query: 636 VCTTFPPISWIGGWGSHCIMELRTSILCLDVGDRN 532
+CT ++WI +HCI + + + CL + +++
Sbjct: 29 ICTEQESLNWIQDCINHCIADFKKAAHCLRIANQH 63
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,830,366
Number of Sequences: 27780
Number of extensions: 367545
Number of successful extensions: 920
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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