Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2332
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1224 + 35045268-35045270,35045735-35045863,35046037-350461...    29   3.2  
02_01_0760 - 5639315-5639685,5640072-5640360                           28   4.3  
11_01_0351 - 2623653-2623795,2623939-2623988,2624086-2624165,262...    28   5.6  
04_04_0765 - 27910189-27912393,27912521-27912598                       27   7.5  

>02_05_1224 + 35045268-35045270,35045735-35045863,35046037-35046180,
            35046306-35046451,35046583-35046739,35046838-35046896,
            35046978-35047137,35047716-35047865,35047969-35048105,
            35048186-35048332,35048428-35048540,35048880-35048971,
            35049637-35049738,35050108-35050145,35050255-35050381,
            35050462-35050632,35050721-35050852,35050929-35051038,
            35051118-35051178,35051386-35051427,35051756-35051933,
            35052043-35052248,35052843-35052962,35053138-35053182,
            35053310-35053408,35053846-35054058,35054254-35054393,
            35054469-35054583,35054684-35054722,35054816-35054899,
            35054969-35055139,35055891-35056100,35056193-35056378,
            35056473-35056601,35056679-35056749,35056834-35056933,
            35057016-35057072,35057778-35057834,35057940-35058020,
            35058256-35058338,35058448-35058562
          Length = 1572

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 103  GAESAASPPEPRSLFGRVRRG 41
            G+ S   PP+P SLFGR+ +G
Sbjct: 1261 GSVSRKKPPQPTSLFGRMAQG 1281


>02_01_0760 - 5639315-5639685,5640072-5640360
          Length = 219

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -1

Query: 139 RLVVIVGARVTRGAESAASPPEPRSLFGRVRRGQERLTLDQEVPG 5
           RLV  +G+ +++ AE+   P     L G+VR  +ER  L  EVPG
Sbjct: 93  RLVDGIGSALSQVAETLTRP-----LTGKVREDEERYRLRFEVPG 132


>11_01_0351 -
           2623653-2623795,2623939-2623988,2624086-2624165,
           2624262-2624585,2625164-2625281,2629019-2629062
          Length = 252

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 141 VHHRVSSLLFIFDGSVRSVQ--VMRAMNNTSMMYY 239
           +HH V+SLL  F G+V  +   V +A+   SMM Y
Sbjct: 3   IHHLVASLLLFFSGNVDDIPGLVEKALIYGSMMDY 37


>04_04_0765 - 27910189-27912393,27912521-27912598
          Length = 760

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 184 DPSKINNKLETRWCTRL-VVIVGARVTRGAESAASPP 77
           DP  I   L T     L  V+ GA    GAESAA PP
Sbjct: 229 DPMLIPPSLSTSLAGSLDAVMAGAESAAGAESAAPPP 265


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,775,481
Number of Sequences: 37544
Number of extensions: 157916
Number of successful extensions: 549
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)