Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2332
         (550 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC071587-1|AAH71587.1|  273|Homo sapiens hypothetical protein FL...    30   6.1  
BC050434-1|AAH50434.1|  273|Homo sapiens FLJ10154 protein protein.     30   6.1  
AL442127-3|CAI13168.1|  273|Homo sapiens RP11-297I6.1 protein.         30   6.1  
AK001016-1|BAA91467.1|  273|Homo sapiens protein ( Homo sapiens ...    30   6.1  

>BC071587-1|AAH71587.1|  273|Homo sapiens hypothetical protein
           FLJ10154 protein.
          Length = 273

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = -1

Query: 178 SKINNKLETRWCTRLVVIVGARVTRGAESAASPPEPRSLFGRVRRGQERLTLDQE 14
           SK N + E+R  +R      +R  R  E A+SPP+   +FGR     +R +LD++
Sbjct: 46  SKRNRRRESRSRSRSTNTAVSRRERDRERASSPPDRIDIFGRT--VSKRSSLDEK 98


>BC050434-1|AAH50434.1|  273|Homo sapiens FLJ10154 protein protein.
          Length = 273

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = -1

Query: 178 SKINNKLETRWCTRLVVIVGARVTRGAESAASPPEPRSLFGRVRRGQERLTLDQE 14
           SK N + E+R  +R      +R  R  E A+SPP+   +FGR     +R +LD++
Sbjct: 46  SKRNRRRESRSRSRSTNTAVSRRERDRERASSPPDRIDIFGRT--VSKRSSLDEK 98


>AL442127-3|CAI13168.1|  273|Homo sapiens RP11-297I6.1 protein.
          Length = 273

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = -1

Query: 178 SKINNKLETRWCTRLVVIVGARVTRGAESAASPPEPRSLFGRVRRGQERLTLDQE 14
           SK N + E+R  +R      +R  R  E A+SPP+   +FGR     +R +LD++
Sbjct: 46  SKRNRRRESRSRSRSTNTAVSRRERDRERASSPPDRIDIFGRT--VSKRSSLDEK 98


>AK001016-1|BAA91467.1|  273|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10154 fis, clone HEMBA1003418. ).
          Length = 273

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = -1

Query: 178 SKINNKLETRWCTRLVVIVGARVTRGAESAASPPEPRSLFGRVRRGQERLTLDQE 14
           SK N + E+R  +R      +R  R  E A+SPP+   +FGR     +R +LD++
Sbjct: 46  SKRNRRRESRSRSRSTNTAVSRRERDRERASSPPDRIDIFGRT--VSKRSSLDEK 98


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,373,750
Number of Sequences: 237096
Number of extensions: 874857
Number of successful extensions: 1520
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1520
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)