Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2332
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110498-5|CAL69743.1|  134|Caenorhabditis elegans Hypothetical ...    29   1.7  
U28730-2|AAA68262.1| 1009|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z81560-7|CAB76737.2|  188|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>AL110498-5|CAL69743.1|  134|Caenorhabditis elegans Hypothetical
           protein Y64G10A.10 protein.
          Length = 134

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +3

Query: 60  NSERGSGGDAADSAPRVTRAPTITTSRVHHRVSSLL 167
           NS+ G GG A +++  VT  P  T+S   + VSS+L
Sbjct: 29  NSDLGIGGKAVENSDGVTEQPEQTSSLPTNTVSSIL 64


>U28730-2|AAA68262.1| 1009|Caenorhabditis elegans Hypothetical
           protein K10B2.5 protein.
          Length = 1009

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 66  ERGSGGDAADSAPRVTRAPTITTSRVHHRVS 158
           E G+G  A+ S P+ TR+PT+ T      V+
Sbjct: 537 EDGTGYSASSSGPQFTRSPTLVTPHAGQSVA 567


>Z81560-7|CAB76737.2|  188|Caenorhabditis elegans Hypothetical
           protein K02E2.8a protein.
          Length = 188

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 3   HPGTS*SKVNLSCPRRTLPNSERGSGGDAADSAPRVTRAPTITTSRV 143
           +PGT  +   +S P  T+P +          +    T APT TT+ V
Sbjct: 24  NPGTITTTTTISAPTTTVPITTTNPVSTTTTTTTTTTEAPTTTTTVV 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,469,247
Number of Sequences: 27780
Number of extensions: 143131
Number of successful extensions: 315
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)