Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2331
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    28   1.3  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    28   1.3  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   7.2  
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    25   7.2  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    25   9.5  

>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -3

Query: 630 QIPLSIYQSNVSXSINLTD 574
           Q+PLS Y++N+S +INL +
Sbjct: 97  QVPLSYYKNNISGTINLIE 115


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -3

Query: 522 VKLLPEPIYLYNVNAAT*---I*VIRSQFLRYSVCLTIQTETLYCFTAETGRVVVPIRA 355
           VK +  P+ L N+N  T      +    +L+ SVC T   +  YC     G +V+PI A
Sbjct: 29  VKQIVNPVLLDNLNHPTNGGLYDLALGPYLKNSVCATCHLDERYC-PGHFGHIVLPIPA 86


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 397 LHGRNRQSGGAYPCGL 350
           LHG  R+ GGAY  GL
Sbjct: 848 LHGEIREKGGAYGAGL 863


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 158 PECYGKPESRRSRGKPKLRC-LDGVERDLKVIG 63
           P C G+   R ++ KP L C   GV++ LK +G
Sbjct: 148 PRCQGRGGKRFAKEKPCLSCDGKGVKQHLKHVG 180


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/50 (24%), Positives = 20/50 (40%)
 Frame = +2

Query: 107 VWVCHDFCGSLVCHSILVFSIRTTCPTHRRRPIFIVFMILGSL*ISYNSW 256
           +W+     G L+     + S R      RRRP  +   +LG+  +    W
Sbjct: 74  IWIAGPLTGILIQPIAGILSDRVNSRIGRRRPFMLCASLLGTFSLFLMGW 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,874
Number of Sequences: 5004
Number of extensions: 58741
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)