Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2331
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1441 - 33621423-33622118,33622251-33622315,33623140-336232...    29   4.2  
10_07_0132 + 13263577-13263732,13265391-13265456,13265607-132657...    27   9.8  
03_06_0308 - 33033073-33033130,33033224-33033568,33033655-33033839     27   9.8  

>04_04_1441 -
           33621423-33622118,33622251-33622315,33623140-33623227,
           33623957-33625570
          Length = 820

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 318 LRSSLVVGRLWRPHG*APPLCLFLP*SS 401
           +R S+    +W+PH   PP CL LP S+
Sbjct: 476 VRFSMKNNLVWKPHNPLPPQCLRLPPSA 503


>10_07_0132 +
           13263577-13263732,13265391-13265456,13265607-13265705,
           13267020-13267084,13267210-13267294,13267389-13267422,
           13267539-13267642,13268085-13268408,13269090-13269605
          Length = 482

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 86  PRHLNIGVWVCHDFCGSLVCHSILVFSIRTTCPTHRRRPIFIVFMIL 226
           P  L   +W+C    G +V   + ++S + T    RRRP  +   I+
Sbjct: 57  PHALTSVMWLCGPIAGLIVQPCVGLYSDKCTSSLGRRRPFILTGCII 103


>03_06_0308 - 33033073-33033130,33033224-33033568,33033655-33033839
          Length = 195

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -2

Query: 376 SGGAYPCGLQRRPTTSDDLKMYKTDIRCC--AGKRDMEDAL*P 254
           SGG      ++R + S  +K   +   CC  AG RD+ED   P
Sbjct: 17  SGGGDGVAAKKRRSASSTVKSEASGTACCGGAGARDVEDGASP 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,443,950
Number of Sequences: 37544
Number of extensions: 395533
Number of successful extensions: 995
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)