Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2331
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032644-7|CAA21670.1|  354|Caenorhabditis elegans Hypothetical ...    30   1.6  
U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine rece...    29   2.2  
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    28   5.0  
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    28   5.0  
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    28   5.0  
AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    28   6.6  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    28   6.6  
Z82074-1|CAB04928.2|  480|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AL132864-6|CAB63395.1|  480|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AL032644-7|CAA21670.1|  354|Caenorhabditis elegans Hypothetical
           protein Y51H1A.7 protein.
          Length = 354

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 494 RYMGSGNSLT-PGESRARPTSKRQKKSTSVKLIEXD 598
           R MG G + T P + R RPT K +    + KLI+ +
Sbjct: 244 RAMGPGEAATAPAKRRGRPTKKEEAAEAAAKLIQAE 279


>U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 9 protein.
          Length = 341

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 205 FYSFYDIRIFVNIIQLLVIARPPYLVF-LHSTEYPSYTF 318
           F  F  I  F   I L+  A  PYL+F +  +++P YTF
Sbjct: 130 FSVFIYIPSFTQFIVLMFTAADPYLIFGMLKSKFPDYTF 168


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
 Frame = -3

Query: 360 RAVSKDVLLPVMTLKCIRRIFGAVQENEIWRTRYNQEL--YDIYKDP-NIIKTIKIGRLR 190
           +A+S+ V +   +L+  RR+ G     +  R  + +++    + +DP N +K  K+G   
Sbjct: 759 KALSERVRITHASLE--RRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRKLG--- 813

Query: 189 WVGHVVRMENTRMLWQT 139
           W GHV R ++ R  W T
Sbjct: 814 WAGHVARRKDGR--WTT 828


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
 Frame = -3

Query: 360  RAVSKDVLLPVMTLKCIRRIFGAVQENEIWRTRYNQEL--YDIYKDP-NIIKTIKIGRLR 190
            +A+S+ V +   +L+  RR+ G     +  R  + +++    + +DP N +K  K+G   
Sbjct: 934  KALSERVRITHASLE--RRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRKLG--- 988

Query: 189  WVGHVVRMENTRMLWQT 139
            W GHV R ++ R  W T
Sbjct: 989  WAGHVARRKDGR--WTT 1003


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
 Frame = -3

Query: 360 RAVSKDVLLPVMTLKCIRRIFGAVQENEIWRTRYNQEL--YDIYKDP-NIIKTIKIGRLR 190
           +A+S+ V +   +L+  RR+ G     +  R  + +++    + +DP N +K  K+G   
Sbjct: 673 KALSERVRITHASLE--RRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRKLG--- 727

Query: 189 WVGHVVRMENTRMLWQT 139
           W GHV R ++ R  W T
Sbjct: 728 WAGHVARRKDGR--WTT 742


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
 Frame = -3

Query: 360 RAVSKDVLLPVMTLKCIRRIFGAVQENEIWRTRYNQEL--YDIYKDP-NIIKTIKIGRLR 190
           +A+S+ V +   +L+  RR+ G     +  R  + +++    + +DP N +K  K+G   
Sbjct: 285 KALSERVRITHASLE--RRLVGITLTQQRERDLHREDIRKMSLVRDPLNFVKKRKLG--- 339

Query: 189 WVGHVVRMENTRMLWQT 139
           W GHV R ++ R  W T
Sbjct: 340 WAGHVARRKDGR--WTT 354


>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 409 NALLLHGRNRQSGGAYPCGLQ 347
           +A L+ GRN++SGG   CG Q
Sbjct: 65  DASLIFGRNKRSGGTCGCGAQ 85


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 409 NALLLHGRNRQSGGAYPCGLQ 347
           +A L+ GRN++SGG   CG Q
Sbjct: 65  DASLIFGRNKRSGGTCGCGAQ 85


>Z82074-1|CAB04928.2|  480|Caenorhabditis elegans Hypothetical
           protein W06H12.1 protein.
          Length = 480

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 436 QCLPHHSNRNALLLHGRNRQSGGAYPC-GLQRRPTTSDDLKMYKTDIRCC 290
           +C   ++ ++AL+LH +   +  AY C G     TT + L++++     C
Sbjct: 392 KCKASYTQKHALMLHQKIHANPDAYQCRGCGTNYTTQNGLRLHRQRNPAC 441


>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical protein
            M03A8.2 protein.
          Length = 2275

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 503  GSGNSLTPGESRARPTSKRQ 562
            GSG ++ PGESR RP   +Q
Sbjct: 1418 GSGITIQPGESRTRPMPAKQ 1437


>AL132864-6|CAB63395.1|  480|Caenorhabditis elegans Hypothetical
           protein W06H12.1 protein.
          Length = 480

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 436 QCLPHHSNRNALLLHGRNRQSGGAYPC-GLQRRPTTSDDLKMYKTDIRCC 290
           +C   ++ ++AL+LH +   +  AY C G     TT + L++++     C
Sbjct: 392 KCKASYTQKHALMLHQKIHANPDAYQCRGCGTNYTTQNGLRLHRQRNPAC 441


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,502,844
Number of Sequences: 27780
Number of extensions: 333409
Number of successful extensions: 773
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)