Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2329
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    38   0.002
SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb...    28   1.6  

>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 26/88 (29%), Positives = 35/88 (39%)
 Frame = +2

Query: 221 DKQRGAXAIGXXXXXXXXXXXXXXPYVPDATRKLRGQLNVDAEKXXXXXXXXXXXXXXXX 400
           ++Q+ A AIG              PY+P  +  +  QLN  A                  
Sbjct: 696 ERQKCADAIGYALNLIYLLAAIFYPYMPSTSTSIYKQLNAPAAAIPDTWELCLLP----- 750

Query: 401 GHVIGKPEPLFVXIXXXRLEELRARYAG 484
           GH IG+PE LF  I     EE R++Y G
Sbjct: 751 GHRIGEPEYLFTRIDESMEEEWRSKYGG 778


>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 209

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/72 (19%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +3

Query: 489 ISQRADKXNSKTLDIAELEKAIAEQGDAVRKLKSTTKDKSVW-QPRGREAVXAEETAHRS 665
           I+    +  ++ LD+A  ++  A Q +  R+ K   + + VW + R       ++  H++
Sbjct: 134 IADEVARRRARQLDLANQQREQARQDEIARERKRRVESEKVWEETRDNRVGNWQDFLHKT 193

Query: 666 SKXS*NATSXEP 701
            K +    + +P
Sbjct: 194 KKNNLKKKNKKP 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,058
Number of Sequences: 5004
Number of extensions: 30295
Number of successful extensions: 62
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)