Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2329
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73427-5|CAA97803.1|  917|Caenorhabditis elegans Hypothetical pr...    53   2e-07
U41543-11|AAP40530.1|  362|Caenorhabditis elegans Hypothetical p...    29   2.7  
U41543-10|AAP40531.1|  374|Caenorhabditis elegans Hypothetical p...    29   2.7  
U41543-9|AAB37021.2|  453|Caenorhabditis elegans Hypothetical pr...    29   2.7  

>Z73427-5|CAA97803.1|  917|Caenorhabditis elegans Hypothetical
           protein F58B3.5 protein.
          Length = 917

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 29/107 (27%), Positives = 47/107 (43%)
 Frame = +2

Query: 167 NXHMQSEQPWVLLKGSEDDKQRGAXAIGXXXXXXXXXXXXXXPYVPDATRKLRGQLNVDA 346
           N +MQ++ PWVL+K  E+ K+R    IG              P +P  +  +R Q  + A
Sbjct: 490 NQYMQAQTPWVLMKKDEEGKKRAGTIIGVAANIAYHVSVLLYPIMPTISATIREQCGLPA 549

Query: 347 EKXXXXXXXXXXXXXXXXGHVIGKPEPLFVXIXXXRLEELRARYAGT 487
                             GH IG+P PLF  +   ++ E +A++ G+
Sbjct: 550 ----LPLFTPFPICYLKAGHKIGQPSPLFQKLDPAQIAEFKAKFGGS 592


>U41543-11|AAP40530.1|  362|Caenorhabditis elegans Hypothetical
           protein F46H5.2b protein.
          Length = 362

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = +3

Query: 477 TPARISQRADKXNSKTLDIAELEKAIAEQGDAVRKLKS-TTKDKSVWQ----PRGREAVX 641
           T  +I Q  +    KT + +  E+   E+GD  RKL S + +DK V +    PRGR A  
Sbjct: 33  TSEKIKQFRENNKRKTSNSSSEEEPETEEGDPSRKLSSKSAEDKFVGRGIDAPRGRIANI 92

Query: 642 AEETA 656
             E++
Sbjct: 93  RRESS 97


>U41543-10|AAP40531.1|  374|Caenorhabditis elegans Hypothetical
           protein F46H5.2c protein.
          Length = 374

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = +3

Query: 477 TPARISQRADKXNSKTLDIAELEKAIAEQGDAVRKLKS-TTKDKSVWQ----PRGREAVX 641
           T  +I Q  +    KT + +  E+   E+GD  RKL S + +DK V +    PRGR A  
Sbjct: 124 TSEKIKQFRENNKRKTSNSSSEEEPETEEGDPSRKLSSKSAEDKFVGRGIDAPRGRIANI 183

Query: 642 AEETA 656
             E++
Sbjct: 184 RRESS 188


>U41543-9|AAB37021.2|  453|Caenorhabditis elegans Hypothetical
           protein F46H5.2a protein.
          Length = 453

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = +3

Query: 477 TPARISQRADKXNSKTLDIAELEKAIAEQGDAVRKLKS-TTKDKSVWQ----PRGREAVX 641
           T  +I Q  +    KT + +  E+   E+GD  RKL S + +DK V +    PRGR A  
Sbjct: 124 TSEKIKQFRENNKRKTSNSSSEEEPETEEGDPSRKLSSKSAEDKFVGRGIDAPRGRIANI 183

Query: 642 AEETA 656
             E++
Sbjct: 184 RRESS 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,190,704
Number of Sequences: 27780
Number of extensions: 190273
Number of successful extensions: 498
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)