Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2328
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...   215   2e-57
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    55   5e-09
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    33   0.022
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   4.3  

>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score =  215 bits (526), Expect = 2e-57
 Identities = 101/131 (77%), Positives = 112/131 (85%)
 Frame = +2

Query: 8   STSRWAEALREISGRLAEMPADSGYPAYLGARLASFYXRAGRVKCLGNPDREGSXSIVGA 187
           STSRWAEALREISGRLAEMPADSGYPAYLGA+LASFY RAGR +CLG+PDREG+ SIVGA
Sbjct: 358 STSRWAEALREISGRLAEMPADSGYPAYLGAKLASFYERAGRARCLGSPDREGTVSIVGA 417

Query: 188 XSPPGGDFSDPVTAATLGIVXVFWGLDKKLAQRKHXPSINWLI*YSKYMRALDDFYEKNY 367
            SPPGGDFSDPVT+ATLGIV VFWGLDKKLAQRKH PSIN  + YSKY+ AL  +YE+  
Sbjct: 418 VSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINTSLSYSKYINALQPWYEERV 477

Query: 368 PEFVPLMTKVK 400
           P F  L  ++K
Sbjct: 478 PGFNTLRDQIK 488


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 54.8 bits (126), Expect = 5e-09
 Identities = 35/107 (32%), Positives = 54/107 (50%)
 Frame = +2

Query: 20  WAEALREISGRLAEMPADSGYPAYLGARLASFYXRAGRVKCLGNPDREGSXSIVGAXSPP 199
           +A+ALRE+S    E+P   GYP Y+   L++ Y RAGRV+      R GS + +   + P
Sbjct: 281 YADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVE-----GRNGSITQIPILTMP 335

Query: 200 GGDFSDPVTAATLGIVXVFWGLDKKLAQRKHXPSINWLI*YSKYMRA 340
             D + P+   T  I      +D++L      P IN L   S+ M++
Sbjct: 336 NDDITHPIPDLTGYITEGQIFVDRQLHNNAIYPPINVLPSLSRLMKS 382


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 32.7 bits (71), Expect = 0.022
 Identities = 26/106 (24%), Positives = 45/106 (42%)
 Frame = +2

Query: 17  RWAEALREISGRLAEMPADSGYPAYLGARLASFYXRAGRVKCLGNPDREGSXSIVGAXSP 196
           R+ +A  E+S  L  +P+  GY   L   + +   R    K       +GS + V A   
Sbjct: 306 RFTQAGSEVSALLGRIPSAVGYQPTLATDMGAMQERITTTK-------KGSITSVQAVYV 358

Query: 197 PGGDFSDPVTAATLGIVXVFWGLDKKLAQRKHXPSINWLI*YSKYM 334
           P  D +DP  A T   +     L + +++    P+++ L   S+ M
Sbjct: 359 PADDLTDPAPATTFAHLDATTVLSRSISELGIYPAVDPLDSKSRMM 404


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 62   MPAD-SGYPAYLGARLASFYXRAGRVKC 142
            +P D SG P  L  R++SFY ++   KC
Sbjct: 1231 VPTDISGKPLCLRGRISSFYRKSIHKKC 1258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 861,895
Number of Sequences: 5004
Number of extensions: 12858
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)