Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2328
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 223 3e-59
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 215 1e-56
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 59 1e-09
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 59 1e-09
08_02_0360 + 16196712-16197560,16198126-16198875 30 0.77
11_06_0205 + 21198533-21199162 29 1.4
08_02_0871 - 22075553-22075731,22075815-22076028,22076309-220763... 27 7.2
02_04_0191 - 20783143-20784365,20784453-20784597,20784977-207853... 27 7.2
02_01_0302 - 2021221-2023305 26 9.5
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 223 bits (546), Expect = 3e-59
Identities = 103/131 (78%), Positives = 114/131 (87%)
Frame = +2
Query: 8 STSRWAEALREISGRLAEMPADSGYPAYLGARLASFYXRAGRVKCLGNPDREGSXSIVGA 187
STSRWAEALREISGRLAEMPADSGYPAYL ARLASFY RAG+VKCLG+PDR GS +IVGA
Sbjct: 370 STSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGSPDRTGSVTIVGA 429
Query: 188 XSPPGGDFSDPVTAATLGIVXVFWGLDKKLAQRKHXPSINWLI*YSKYMRALDDFYEKNY 367
SPPGGDFSDPVT+ATL IV VFWGLDKKLAQRKH PS+NWLI YSKY +AL+ FYEK
Sbjct: 430 VSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSKALESFYEKFD 489
Query: 368 PEFVPLMTKVK 400
+F+ + TK +
Sbjct: 490 QDFIDIRTKAR 500
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 215 bits (524), Expect = 1e-56
Identities = 100/134 (74%), Positives = 114/134 (85%), Gaps = 3/134 (2%)
Frame = +2
Query: 8 STSRWAEALREISGRLAEMPADSGYPAYLGARLASFYXRAGRVKCLGNPDREGSXSIVGA 187
STSRWAEALREISGRLAEMPADSGYPAYL ARLASFY RAG+V+CLG+P R+GS +IVGA
Sbjct: 356 STSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVRCLGSPKRDGSVTIVGA 415
Query: 188 XSPPGGDFSDPVTAATLGIVXVFWGLDKKLAQRKHXPSINWLI*YSKYMR---ALDDFYE 358
SPPGGDFSDPVT+ATL IV VFWGLDKKLAQRKH PS+NWLI YSKY + AL+ YE
Sbjct: 416 VSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSKIPTALEPHYE 475
Query: 359 KNYPEFVPLMTKVK 400
+ P+F+ + TK +
Sbjct: 476 REDPDFIDIRTKAR 489
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 59.3 bits (137), Expect = 1e-09
Identities = 37/109 (33%), Positives = 57/109 (52%)
Frame = +2
Query: 14 SRWAEALREISGRLAEMPADSGYPAYLGARLASFYXRAGRVKCLGNPDREGSXSIVGAXS 193
S +A+ALRE+S E+P GYP Y+ LA+ Y RAGR++ R+GS + + +
Sbjct: 288 SSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIE-----GRKGSITQIPILT 342
Query: 194 PPGGDFSDPVTAATLGIVXVFWGLDKKLAQRKHXPSINWLI*YSKYMRA 340
P D + P T I +D++L R+ P IN L S+ M++
Sbjct: 343 MPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKS 391
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 58.8 bits (136), Expect = 1e-09
Identities = 37/109 (33%), Positives = 56/109 (51%)
Frame = +2
Query: 14 SRWAEALREISGRLAEMPADSGYPAYLGARLASFYXRAGRVKCLGNPDREGSXSIVGAXS 193
S +A+ALRE+S E+P GYP Y+ LA+ Y RAGR++ R GS + + +
Sbjct: 318 SSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIE-----GRSGSITQIPILT 372
Query: 194 PPGGDFSDPVTAATLGIVXVFWGLDKKLAQRKHXPSINWLI*YSKYMRA 340
P D + P T I +D++L R+ P IN L S+ M++
Sbjct: 373 MPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKS 421
>08_02_0360 + 16196712-16197560,16198126-16198875
Length = 532
Score = 29.9 bits (64), Expect = 0.77
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -2
Query: 279 ASFLSSPQNTCTMPSVAAVTGSEKSPPGGDXAPTMDXEPSRSGLPRHLT 133
A+ L SP+N + + + GS K PG P+ +RS PRH+T
Sbjct: 286 ATVLGSPEN---LEPIGELPGSAKPEPGVRPNPSRPRSVARSLSPRHVT 331
>11_06_0205 + 21198533-21199162
Length = 209
Score = 29.1 bits (62), Expect = 1.4
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +2
Query: 2 RXSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYXRAGRVKCLGNPDREGSXSIV 181
R S AEAL++ G A +D G +LGA + G +G+ DR G +
Sbjct: 77 RRGRSVTAEALQD--GVTAGATSDGGGGRFLGAVVGKCAAARGGGVTVGSGDRRGGGRFL 134
Query: 182 GAXSP 196
GA P
Sbjct: 135 GAQDP 139
>08_02_0871 -
22075553-22075731,22075815-22076028,22076309-22076351,
22076557-22076616,22077522-22077593,22078163-22078368,
22078782-22078837,22079540-22079777,22079908-22080081,
22080157-22080292,22080822-22080853,22081563-22081619,
22081713-22081965,22082057-22082145,22082590-22082643,
22084016-22084207,22085338-22085499
Length = 738
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 291 CFRCASFLSSPQNTCTMPSV-AAVTGSEKSPPG 196
C FLSS + CTM +V G +++PPG
Sbjct: 496 CSTMPHFLSSSRVKCTMLAVLCGKVGKQRTPPG 528
>02_04_0191 -
20783143-20784365,20784453-20784597,20784977-20785345,
20786164-20786250,20786405-20786603,20786733-20786818
Length = 702
Score = 26.6 bits (56), Expect = 7.2
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -2
Query: 276 SFLSSPQNTCTMPSVAAVTGSEKSPPGGDXAPTMDXEP-SRSGLPRHLTL 130
+FL + Q+T + + TGS KS G PT+ EP ++ G +HL L
Sbjct: 406 NFLKAAQSTKAVHIRSRGTGSSKSST-GSKTPTVAGEPGTQLGSDQHLEL 454
>02_01_0302 - 2021221-2023305
Length = 694
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -2
Query: 279 ASFLSSP-QNTCTMPSV--AAVTGSEKSPPGGDXAPTMDXEPSRSGLP 145
+S+ + P NT + PS +A T S SPPGG + T G P
Sbjct: 431 SSYPAPPGSNTPSYPSPPSSATTPSSHSPPGGSSSTTPSYPSPNGGKP 478
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,656,415
Number of Sequences: 37544
Number of extensions: 105572
Number of successful extensions: 383
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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