Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2328
(400 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 242 6e-65
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 63 8e-11
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 59 1e-09
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 35 0.025
Z78201-2|CAB01588.1| 324|Caenorhabditis elegans Hypothetical pr... 34 0.043
AF465981-1|AAL76993.1| 324|Caenorhabditis elegans cuticle colla... 34 0.043
AF262406-1|AAL08218.1| 324|Caenorhabditis elegans cuticle colla... 34 0.043
Z71177-3|CAA94869.1| 325|Caenorhabditis elegans Hypothetical pr... 28 2.1
U40414-3|AAA81406.1| 321|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical p... 27 5.0
U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. 27 5.0
U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. 27 5.0
AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell... 27 5.0
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 27 6.5
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 27 6.5
U64833-10|AAB04821.2| 427|Caenorhabditis elegans Hypothetical p... 27 6.5
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 27 6.5
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 27 6.5
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 27 6.5
U56966-1|AAA98717.1| 208|Caenorhabditis elegans Ets class trans... 26 8.7
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 242 bits (593), Expect = 6e-65
Identities = 112/131 (85%), Positives = 120/131 (91%)
Frame = +2
Query: 8 STSRWAEALREISGRLAEMPADSGYPAYLGARLASFYXRAGRVKCLGNPDREGSXSIVGA 187
STSRWAEALREISGRL EMPADSGYPAYL ARLASFY RAGRVKCLG+P+REGS +IVGA
Sbjct: 339 STSRWAEALREISGRLGEMPADSGYPAYLAARLASFYERAGRVKCLGSPEREGSVTIVGA 398
Query: 188 XSPPGGDFSDPVTAATLGIVXVFWGLDKKLAQRKHXPSINWLI*YSKYMRALDDFYEKNY 367
SPPGGDF+DPVT+ATLGIV VFWGLDKKLAQRKH PSINWLI YS+YMRAL++FYEKNY
Sbjct: 399 VSPPGGDFADPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSEYMRALEEFYEKNY 458
Query: 368 PEFVPLMTKVK 400
PEFV L TK K
Sbjct: 459 PEFVSLRTKCK 469
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 62.9 bits (146), Expect = 8e-11
Identities = 41/109 (37%), Positives = 58/109 (53%)
Frame = +2
Query: 14 SRWAEALREISGRLAEMPADSGYPAYLGARLASFYXRAGRVKCLGNPDREGSXSIVGAXS 193
S +AEALREIS E+P G+P Y+ LA+ Y RAGRVK REGS + + +
Sbjct: 293 SSYAEALREISAAREEVPGRRGFPGYMYTDLATIYERAGRVK-----GREGSITQIPILT 347
Query: 194 PPGGDFSDPVTAATLGIVXVFWGLDKKLAQRKHXPSINWLI*YSKYMRA 340
P D + P+ T I +DK+L +R P I+ L S+ M++
Sbjct: 348 MPNNDITHPIPDLTGYITEGQIYIDKQLHKRLIYPPIDVLPSLSRLMKS 396
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 59.3 bits (137), Expect = 1e-09
Identities = 38/109 (34%), Positives = 57/109 (52%)
Frame = +2
Query: 14 SRWAEALREISGRLAEMPADSGYPAYLGARLASFYXRAGRVKCLGNPDREGSXSIVGAXS 193
S +AEALRE+S E+P G+P Y+ LA+ Y RAGRV+ R+GS + + +
Sbjct: 281 SSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVE-----GRDGSITQIPILT 335
Query: 194 PPGGDFSDPVTAATLGIVXVFWGLDKKLAQRKHXPSINWLI*YSKYMRA 340
P D + P+ T I +D++L R P IN L S+ M++
Sbjct: 336 MPNDDITHPIPDLTGYITEGQIYVDRQLHNRLIYPPINVLPSLSRLMKS 384
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 34.7 bits (76), Expect = 0.025
Identities = 28/106 (26%), Positives = 45/106 (42%)
Frame = +2
Query: 17 RWAEALREISGRLAEMPADSGYPAYLGARLASFYXRAGRVKCLGNPDREGSXSIVGAXSP 196
R+ +A E+S L +P+ GY L + S R K +GS + V A
Sbjct: 319 RFTQAGSEVSALLGRIPSAVGYQPTLATDMGSMQERITTTK-------KGSITSVQAIYV 371
Query: 197 PGGDFSDPVTAATLGIVXVFWGLDKKLAQRKHXPSINWLI*YSKYM 334
P D +DP A T + L + +A+ P+++ L S+ M
Sbjct: 372 PADDLTDPAPATTFAHLDATTVLSRGIAELAIYPAVDPLDSTSRIM 417
>Z78201-2|CAB01588.1| 324|Caenorhabditis elegans Hypothetical
protein ZK836.1 protein.
Length = 324
Score = 33.9 bits (74), Expect = 0.043
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = -2
Query: 291 CFRCASFLSSPQNTCTMPSVAAVTGSEKSP--PGGDXAPTMDXEPSRSGLP 145
CF C L PQ + P + + G+ P PG D P M E +G P
Sbjct: 164 CFTCPQGLPGPQGSQGAPGIRGMRGARGQPGYPGRDGQPGMPGEMGPTGAP 214
>AF465981-1|AAL76993.1| 324|Caenorhabditis elegans cuticle collagen
LON-3 protein.
Length = 324
Score = 33.9 bits (74), Expect = 0.043
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = -2
Query: 291 CFRCASFLSSPQNTCTMPSVAAVTGSEKSP--PGGDXAPTMDXEPSRSGLP 145
CF C L PQ + P + + G+ P PG D P M E +G P
Sbjct: 164 CFTCPQGLPGPQGSQGAPGIRGMRGARGQPGYPGRDGQPGMPGEMGPTGAP 214
>AF262406-1|AAL08218.1| 324|Caenorhabditis elegans cuticle collagen
protein LON-3 protein.
Length = 324
Score = 33.9 bits (74), Expect = 0.043
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = -2
Query: 291 CFRCASFLSSPQNTCTMPSVAAVTGSEKSP--PGGDXAPTMDXEPSRSGLP 145
CF C L PQ + P + + G+ P PG D P M E +G P
Sbjct: 164 CFTCPQGLPGPQGSQGAPGIRGMRGARGQPGYPGRDGQPGMPGEMGPTGAP 214
>Z71177-3|CAA94869.1| 325|Caenorhabditis elegans Hypothetical
protein AC3.6 protein.
Length = 325
Score = 28.3 bits (60), Expect = 2.1
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +2
Query: 62 MPADSGYPAYLGARLASFYXRAGRVKCLGNPDREGSXSIVGAXSPPGGDFSDPVT 226
MP D+G G A+ + G+P GS VG PPG D P++
Sbjct: 190 MPGDNGSGGANGHDGATGQPGRSGTRSYGSPGPAGSPGRVGRGGPPGPDGGYPMS 244
>U40414-3|AAA81406.1| 321|Caenorhabditis elegans Hypothetical
protein F53B3.6 protein.
Length = 321
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 310 PVDGGXVLPLRQLLVEPPEHXHDAERGRRHRVRE 209
P DGG V+P+R+ + P++ + RHR E
Sbjct: 105 PNDGGVVIPIRRDIGRDPQYDFRSSPQTRHRDAE 138
>Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical
protein F08A8.8 protein.
Length = 222
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 209 FSDPVTAATLGIVXVFWGLDKKLAQRKHXPSINWL 313
+S ++A +L I+ + W L + L R+H P+I L
Sbjct: 18 YSSIMSAISLLIIVLNWKLSRLLISRRHHPNIQKL 52
>U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.1 bits (57), Expect = 5.0
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 269 KKLAQRKHXPSINWLI*YSKYMRALDDFYEKN 364
+K QRK P +N Y K RAL +YEKN
Sbjct: 103 RKWGQRKAKPHMN----YDKLSRALRYYYEKN 130
>U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.1 bits (57), Expect = 5.0
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 269 KKLAQRKHXPSINWLI*YSKYMRALDDFYEKN 364
+K QRK P +N Y K RAL +YEKN
Sbjct: 103 RKWGQRKAKPHMN----YDKLSRALRYYYEKN 130
>AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell
lineage protein 1 protein.
Length = 441
Score = 27.1 bits (57), Expect = 5.0
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 269 KKLAQRKHXPSINWLI*YSKYMRALDDFYEKN 364
+K QRK P +N Y K RAL +YEKN
Sbjct: 103 RKWGQRKAKPHMN----YDKLSRALRYYYEKN 130
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Frame = +2
Query: 62 MPADSGYPAYLGA---RLASFYXRAGRVKCLGNPDREGSXSIVGAXSPPG 202
+P G P Y G + + G+ G P R+G + G PPG
Sbjct: 442 LPGPKGEPGYRGTPGQSIPGLPGKDGKPGLDGAPGRKGENGLPGVRGPPG 491
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Frame = +2
Query: 62 MPADSGYPAYLGA---RLASFYXRAGRVKCLGNPDREGSXSIVGAXSPPG 202
+P G P Y G + + G+ G P R+G + G PPG
Sbjct: 441 LPGPKGEPGYRGTPGQSIPGLPGKDGKPGLDGAPGRKGENGLPGVRGPPG 490
>U64833-10|AAB04821.2| 427|Caenorhabditis elegans Hypothetical
protein B0507.2 protein.
Length = 427
Score = 26.6 bits (56), Expect = 6.5
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 23 AEALREISGRLAEMPADSGYPAYLGARLASFYXRAGRVKCLGN-PD 157
AEA I R EM D G + L A AS + +A +CL N PD
Sbjct: 199 AEAQEVIVARAIEMKHDDGLISSLAAVTASIFSKAD--QCLNNLPD 242
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Frame = +2
Query: 62 MPADSGYPAYLGA---RLASFYXRAGRVKCLGNPDREGSXSIVGAXSPPG 202
+P G P Y G + + G+ G P R+G + G PPG
Sbjct: 441 LPGPKGEPGYRGTPGQSIPGLPGKDGKPGLDGAPGRKGENGLPGVRGPPG 490
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Frame = +2
Query: 62 MPADSGYPAYLGA---RLASFYXRAGRVKCLGNPDREGSXSIVGAXSPPG 202
+P G P Y G + + G+ G P R+G + G PPG
Sbjct: 442 LPGPKGEPGYRGTPGQSIPGLPGKDGKPGLDGAPGRKGENGLPGVRGPPG 491
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Frame = +2
Query: 62 MPADSGYPAYLGA---RLASFYXRAGRVKCLGNPDREGSXSIVGAXSPPG 202
+P G P Y G + + G+ G P R+G + G PPG
Sbjct: 478 LPGPKGEPGYRGTPGQSIPGLPGKDGKPGLDGAPGRKGENGLPGVRGPPG 527
>U56966-1|AAA98717.1| 208|Caenorhabditis elegans Ets class
transcription factorprotein 5 protein.
Length = 208
Score = 26.2 bits (55), Expect = 8.7
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 269 KKLAQRKHXPSINWLI*YSKYMRALDDFYEKNYPEFVPLMTKVK 400
+K +RK P++N Y K RAL +Y+KN +MTKV+
Sbjct: 73 RKWGERKSKPNMN----YDKLSRALRYYYDKN------IMTKVQ 106
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,045,314
Number of Sequences: 27780
Number of extensions: 79462
Number of successful extensions: 451
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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