Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2326
(400 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 226 5e-60
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 226 5e-60
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 226 5e-60
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 221 1e-58
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 140 3e-34
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 140 3e-34
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 129 8e-31
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 124 3e-29
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 66 1e-11
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 66 1e-11
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 66 1e-11
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 60 6e-10
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 60 6e-10
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 53 9e-08
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 52 1e-07
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 45 2e-05
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 38 0.002
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 38 0.003
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 32 0.008
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 36 0.008
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 36 0.008
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.40
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.40
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 29 1.2
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 1.6
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 27 6.5
AF026213-6|AAB71307.1| 655|Caenorhabditis elegans Temporarily a... 27 6.5
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 26 8.7
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 26 8.7
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 226 bits (552), Expect = 5e-60
Identities = 105/124 (84%), Positives = 108/124 (87%)
Frame = +3
Query: 27 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRXIXKFEXEAQEMGKGSFKYAWVL 206
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKR I KFE EAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 207 DKLXAERERGITIDIALWKFETSKXYVTXIDAPGHRDFFXNMITGTSXADCAVLIXXAGX 386
DKL AERERGITIDIALWKFET+K Y+T IDAPGHRDF NMITGTS ADCAVL+ G
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 387 AECE 398
E E
Sbjct: 121 GEFE 124
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 226 bits (552), Expect = 5e-60
Identities = 105/124 (84%), Positives = 108/124 (87%)
Frame = +3
Query: 27 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRXIXKFEXEAQEMGKGSFKYAWVL 206
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKR I KFE EAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 207 DKLXAERERGITIDIALWKFETSKXYVTXIDAPGHRDFFXNMITGTSXADCAVLIXXAGX 386
DKL AERERGITIDIALWKFET+K Y+T IDAPGHRDF NMITGTS ADCAVL+ G
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 387 AECE 398
E E
Sbjct: 121 GEFE 124
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 226 bits (552), Expect = 5e-60
Identities = 105/124 (84%), Positives = 108/124 (87%)
Frame = +3
Query: 27 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRXIXKFEXEAQEMGKGSFKYAWVL 206
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKR I KFE EAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 207 DKLXAERERGITIDIALWKFETSKXYVTXIDAPGHRDFFXNMITGTSXADCAVLIXXAGX 386
DKL AERERGITIDIALWKFET+K Y+T IDAPGHRDF NMITGTS ADCAVL+ G
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 387 AECE 398
E E
Sbjct: 121 GEFE 124
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 221 bits (541), Expect = 1e-58
Identities = 102/115 (88%), Positives = 105/115 (91%)
Frame = +3
Query: 27 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRXIXKFEXEAQEMGKGSFKYAWVL 206
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKR I KFE EAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 207 DKLXAERERGITIDIALWKFETSKXYVTXIDAPGHRDFFXNMITGTSXADCAVLI 371
DKL AERERGITIDIALWKFET+K Y+T IDAPGHRDF NMITGTS ADCAVL+
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLV 115
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 140 bits (340), Expect = 3e-34
Identities = 65/121 (53%), Positives = 82/121 (67%)
Frame = +3
Query: 36 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRXIXKFEXEAQEMGKGSFKYAWVLDKL 215
+K IN++V+GHVD+GKST GHL++ +D R I KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 216 XAERERGITIDIALWKFETSKXYVTXIDAPGHRDFFXNMITGTSXADCAVLIXXAGXAEC 395
ERERG+T+DI FETS + +DAPGH+DF NMITGTS AD A+L+ A E
Sbjct: 227 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 286
Query: 396 E 398
E
Sbjct: 287 E 287
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 140 bits (340), Expect = 3e-34
Identities = 65/121 (53%), Positives = 82/121 (67%)
Frame = +3
Query: 36 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRXIXKFEXEAQEMGKGSFKYAWVLDKL 215
+K IN++V+GHVD+GKST GHL++ +D R I KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 216 XAERERGITIDIALWKFETSKXYVTXIDAPGHRDFFXNMITGTSXADCAVLIXXAGXAEC 395
ERERG+T+DI FETS + +DAPGH+DF NMITGTS AD A+L+ A E
Sbjct: 245 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 304
Query: 396 E 398
E
Sbjct: 305 E 305
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 129 bits (311), Expect = 8e-31
Identities = 59/63 (93%), Positives = 59/63 (93%)
Frame = +3
Query: 27 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRXIXKFEXEAQEMGKGSFKYAWVL 206
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKR I KFE EAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 207 DKL 215
DKL
Sbjct: 61 DKL 63
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 124 bits (298), Expect = 3e-29
Identities = 57/123 (46%), Positives = 79/123 (64%)
Frame = +3
Query: 30 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRXIXKFEXEAQEMGKGSFKYAWVLD 209
G K HIN+V +GHVD+GKST G L++ G +DKR + K+E EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 210 KLXAERERGITIDIALWKFETSKXYVTXIDAPGHRDFFXNMITGTSXADCAVLIXXAGXA 389
ERE+G T+++ FET K + T +DAPGH+ F NMI G + AD AVL+ A
Sbjct: 164 TNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRG 223
Query: 390 ECE 398
E E
Sbjct: 224 EFE 226
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 65.7 bits (153), Expect = 1e-11
Identities = 40/116 (34%), Positives = 59/116 (50%)
Frame = +3
Query: 33 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRXIXKFEXEAQEMGKGSFKYAWVLDK 212
++K H+N+ IGHVD GK+T T + + A G KY + D
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAIT--------------KILATSKGAKYRKYEDI-DN 89
Query: 213 LXAERERGITIDIALWKFETSKXYVTXIDAPGHRDFFXNMITGTSXADCAVLIXXA 380
E+ RGITI+ ++ET+K + ID PGH D+ NMITG + + A+L+ A
Sbjct: 90 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAA 145
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 65.7 bits (153), Expect = 1e-11
Identities = 40/116 (34%), Positives = 59/116 (50%)
Frame = +3
Query: 33 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRXIXKFEXEAQEMGKGSFKYAWVLDK 212
++K H+N+ IGHVD GK+T T + + A G KY + D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAIT--------------KILATSKGAKYRKYEDI-DN 90
Query: 213 LXAERERGITIDIALWKFETSKXYVTXIDAPGHRDFFXNMITGTSXADCAVLIXXA 380
E+ RGITI+ ++ET+K + ID PGH D+ NMITG + + A+L+ A
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAA 146
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 65.7 bits (153), Expect = 1e-11
Identities = 40/116 (34%), Positives = 59/116 (50%)
Frame = +3
Query: 33 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRXIXKFEXEAQEMGKGSFKYAWVLDK 212
++K H+N+ IGHVD GK+T T + + A G KY + D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAIT--------------KILATSKGAKYRKYEDI-DN 90
Query: 213 LXAERERGITIDIALWKFETSKXYVTXIDAPGHRDFFXNMITGTSXADCAVLIXXA 380
E+ RGITI+ ++ET+K + ID PGH D+ NMITG + + A+L+ A
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAA 146
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 60.1 bits (139), Expect = 6e-10
Identities = 39/114 (34%), Positives = 58/114 (50%)
Frame = +3
Query: 39 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRXIXKFEXEAQEMGKGSFKYAWVLDKLX 218
K ++N+ IGH+D GK+T T + +A++ K+ + DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAIT--------------RVQAKKGFAKHIKFDEI-DKGK 87
Query: 219 AERERGITIDIALWKFETSKXYVTXIDAPGHRDFFXNMITGTSXADCAVLIXXA 380
E++RGITI++A +E+ + D PGH DF NMI GTS D AVL+ A
Sbjct: 88 EEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAA 141
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 60.1 bits (139), Expect = 6e-10
Identities = 39/114 (34%), Positives = 58/114 (50%)
Frame = +3
Query: 39 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRXIXKFEXEAQEMGKGSFKYAWVLDKLX 218
K ++N+ IGH+D GK+T T + +A++ K+ + DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAIT--------------RVQAKKGFAKHIKFDEI-DKGK 87
Query: 219 AERERGITIDIALWKFETSKXYVTXIDAPGHRDFFXNMITGTSXADCAVLIXXA 380
E++RGITI++A +E+ + D PGH DF NMI GTS D AVL+ A
Sbjct: 88 EEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAA 141
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 52.8 bits (121), Expect = 9e-08
Identities = 36/90 (40%), Positives = 44/90 (48%)
Frame = +3
Query: 51 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRXIXKFEXEAQEMGKGSFKYAWVLDKLXAERE 230
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ERE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAIHV---------AGHVDKGNT----VTDFLDIERE 73
Query: 231 RGITIDIALWKFETSKXYVTXIDAPGHRDF 320
RGIT+ A + + ID PGH DF
Sbjct: 74 RGITVQSAAVNLDWKGHRINLIDTPGHVDF 103
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 52.4 bits (120), Expect = 1e-07
Identities = 35/107 (32%), Positives = 49/107 (45%)
Frame = +3
Query: 51 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRXIXKFEXEAQEMGKGSFKYAWVLDKLXAERE 230
NI + H+DSGK+T T ++Y G ID E+ +G +D + ER+
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRIDSM---------HEV-RGKDDVGATMDFMDLERQ 95
Query: 231 RGITIDIALWKFETSKXYVTXIDAPGHRDFFXNMITGTSXADCAVLI 371
RGITI A + + ID PGH DF + D AVL+
Sbjct: 96 RGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLV 142
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 45.2 bits (102), Expect = 2e-05
Identities = 33/110 (30%), Positives = 45/110 (40%)
Frame = +3
Query: 51 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRXIXKFEXEAQEMGKGSFKYAWVLDKLXAERE 230
N ++ HVD GKST L+ CG + Q+ +LDKL ERE
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPP---------GQKQ---------MLDKLQVERE 85
Query: 231 RGITIDIALWKFETSKXYVTXIDAPGHRDFFXNMITGTSXADCAVLIXXA 380
RGIT+ + ID PGH DF + + D +L+ A
Sbjct: 86 RGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAA 135
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 38.3 bits (85), Expect = 0.002
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 13/136 (9%)
Frame = +3
Query: 27 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRXIXKF---EXEAQE----MGK 179
M +++ N+ VI HVD GKST T L+ K G I K +F + QE +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 180 GSFKYAWVLDKLXAERERG----ITIDIALWKFETSKXYVTXIDAPGHRDFFXNMITGTS 347
+ + L+K E +G T+++ K + + + ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALG 132
Query: 348 XADCAVLIXXAGXAEC 395
D A+++ C
Sbjct: 133 VTDGALVVVDCVSGVC 148
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 37.9 bits (84), Expect = 0.003
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 13/136 (9%)
Frame = +3
Query: 27 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRXIXKF---EXEAQE----MGK 179
M +++ N+ VI HVD GKST T L+ K G I K +F + QE +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 180 GSFKYAWVLDKLXAERERG----ITIDIALWKFETSKXYVTXIDAPGHRDFFXNMITGTS 347
+ + L+K E +G T+++ K + + + ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALR 132
Query: 348 XADCAVLIXXAGXAEC 395
D A+++ C
Sbjct: 133 VTDGALVVVDCVSGVC 148
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 32.3 bits (70), Expect(2) = 0.008
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +3
Query: 174 GKGSFKYAWVLDKLXAERERGITIDIALWKFETSKXY-VTXIDAPGHRDFFXNMITGTSX 350
GK + A ++ A GIT I + E +K VT +D PGH F G
Sbjct: 168 GKTTLLDAMRNSQIAAGEFGGITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKG 227
Query: 351 ADCAVLIXXA 380
AD VL+ A
Sbjct: 228 ADIVVLVVAA 237
Score = 23.0 bits (47), Expect(2) = 0.008
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +3
Query: 54 IVVIGHVDSGKST 92
+ ++GHVD GK+T
Sbjct: 159 VTIMGHVDHGKTT 171
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 36.3 bits (80), Expect = 0.008
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 1/114 (0%)
Frame = +3
Query: 33 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRXIXKFEXEAQEMGKGSFKYAWVLD 209
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRM------------AGKLRY---MD 59
Query: 210 KLXAERERGITIDIALWKFETSKXYVTXIDAPGHRDFFXNMITGTSXADCAVLI 371
E+ RGIT+ + + ID+PGH DF + + +D A+L+
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLL 113
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 36.3 bits (80), Expect = 0.008
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 1/114 (0%)
Frame = +3
Query: 33 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRXIXKFEXEAQEMGKGSFKYAWVLD 209
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRM------------AGKLRY---MD 59
Query: 210 KLXAERERGITIDIALWKFETSKXYVTXIDAPGHRDFFXNMITGTSXADCAVLI 371
E+ RGIT+ + + ID+PGH DF + + +D A+L+
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLL 113
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 30.7 bits (66), Expect = 0.40
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 6 VIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 113
+IRD P K+ + V+G+VD+GKST G L +
Sbjct: 128 IIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 30.7 bits (66), Expect = 0.40
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 6 VIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 113
+IRD P K+ + V+G+VD+GKST G L +
Sbjct: 128 IIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 270 TSKXYVTXIDAPGHRDFFXNMITGTSXADCAVLIXXAGXAEC 395
T +V+ +D PGH M+ G + D A L+ AG C
Sbjct: 124 TCVRHVSFVDCPGHDILMATMLNGAAVMDAAFLL-VAGNEPC 164
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 1.6
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 48 INIVVIGHVDSGKSTTT 98
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 1.6
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 48 INIVVIGHVDSGKSTTT 98
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 294 IDAPGHRDFFXNMITGTSXADCAVLI 371
ID PGH F G+S D A+L+
Sbjct: 554 IDTPGHESFSNLRTRGSSLCDFAILV 579
>AF026213-6|AAB71307.1| 655|Caenorhabditis elegans Temporarily
assigned gene nameprotein 123 protein.
Length = 655
Score = 26.6 bits (56), Expect = 6.5
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = -2
Query: 126 YLHICRSNDQWWW 88
Y H+C + WWW
Sbjct: 570 YFHLCAEDYHWWW 582
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 26.2 bits (55), Expect = 8.7
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 21 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRXIXKFEXEAQEMGK 179
PK +EK I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 26.2 bits (55), Expect = 8.7
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 21 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRXIXKFEXEAQEMGK 179
PK +EK I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 26.2 bits (55), Expect = 8.7
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 21 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRXIXKFEXEAQEMGK 179
PK +EK I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,235,897
Number of Sequences: 27780
Number of extensions: 113125
Number of successful extensions: 285
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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