Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2325
(374 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 139 8e-34
07_01_0578 + 4295386-4296489,4297394-4297507 137 3e-33
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.042
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 33 0.055
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 32 0.13
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 31 0.22
03_05_0366 - 23505755-23506441 31 0.29
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 29 1.2
02_04_0457 + 23093020-23093343,23093798-23093806 29 1.6
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 28 2.1
03_01_0092 - 731069-731434,731569-733080 28 2.7
12_02_0488 + 19587337-19587648,19587739-19587798,19587876-195879... 27 3.6
11_06_0209 + 21282079-21282369,21287029-21287137,21287462-212875... 27 3.6
11_01_0411 - 3114959-3115000,3115504-3116703 27 3.6
11_01_0074 + 582210-582434,582521-582712,582785-582950,584013-58... 27 4.8
08_02_1285 - 25881091-25881798 27 4.8
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 27 4.8
10_07_0029 + 12031711-12032464,12044289-12044386 27 6.3
09_06_0153 - 21243108-21245660 27 6.3
07_01_1064 + 9385330-9385432,9386181-9386236,9386938-9387082,938... 27 6.3
03_01_0147 - 1170481-1171260,1171332-1171511 27 6.3
02_05_1186 + 34816774-34817055,34817216-34817334,34818139-348186... 27 6.3
09_01_0086 - 1225132-1225299,1225530-1225679,1227629-1228006,122... 26 8.4
07_01_0469 - 3552409-3553368 26 8.4
04_01_0244 - 3194141-3195091,3195301-3195312 26 8.4
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 139 bits (336), Expect = 8e-34
Identities = 67/102 (65%), Positives = 76/102 (74%), Gaps = 1/102 (0%)
Frame = +2
Query: 71 SVARPLXSVYS-EKXETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 247
+ ARPL SV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 248 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRM 373
HQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRM
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRM 104
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 137 bits (331), Expect = 3e-33
Identities = 66/100 (66%), Positives = 78/100 (78%), Gaps = 2/100 (2%)
Frame = +2
Query: 80 RPLXSVYSEKXE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 253
RPL SV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 254 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRM 373
TSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRM
Sbjct: 66 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRM 105
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.042
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 260 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 370
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 33.5 bits (73), Expect = 0.055
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -3
Query: 366 PPRHMLPKAP*PDLWVPPP 310
PPRH++P+ P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 32.3 bits (70), Expect = 0.13
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +1
Query: 43 ASLK*RNESIGSPTFXVGVFREXRDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 198
ASL N + P+F V G SQA V + GAHT G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 31.5 bits (68), Expect = 0.22
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 43 ASLK*RNESIGSPTFXVGVFREXRDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 198
ASL N I +PTF +G + G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 0.29
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 146 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 322
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 323 HRSGQGA 343
+ + + A
Sbjct: 168 NDNDEEA 174
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 29.1 bits (62), Expect = 1.2
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 43 ASLK*RNESIGSPTFXVGVFREXRDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 198
ASL N I +PT +G + G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 1.6
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 245 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 349
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 28.3 bits (60), Expect = 2.1
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +1
Query: 43 ASLK*RNESIGSPTFXVGVFREXRDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 198
ASL+ N ++ +PT V + G S V + GAHT G + C+ F
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIGKAR-CTTF 247
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 27.9 bits (59), Expect = 2.7
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -3
Query: 363 PRHMLPKAP*PDLWVPPPRTRGIRATARPVP 271
P H++P P P L P P+++ R P
Sbjct: 267 PHHIMPMTPQPQLQPPQPQSKEANTVVRAAP 297
>12_02_0488 +
19587337-19587648,19587739-19587798,19587876-19587941,
19588017-19588082,19588253-19588345
Length = 198
Score = 27.5 bits (58), Expect = 3.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 155 KAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 268
K ++ D N++ + SK R VSK H SAES
Sbjct: 80 KRKVQMDTENELMTNRSKEVRTKMSVSKACKHSVSAES 117
>11_06_0209 +
21282079-21282369,21287029-21287137,21287462-21287580,
21287722-21287829,21287943-21288062,21288838-21289011,
21289111-21289212
Length = 340
Score = 27.5 bits (58), Expect = 3.6
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 149 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRA---VARIPRVRGGG 319
VF PIR D+V+ V +K + ++ +Q GTGRA R P+ RGG
Sbjct: 160 VFDVPIRKDIVHRVGTHSTKTISEVSGTGRKPYNQK-----GTGRARHGTLRGPQFRGGA 214
Query: 320 T 322
T
Sbjct: 215 T 215
>11_01_0411 - 3114959-3115000,3115504-3116703
Length = 413
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -3
Query: 351 LPKAP*PDLWVPPPRTRGIRATARPVPHDSALV-W*PASL 235
+P P P LW+P P A P+ H S+L W P +L
Sbjct: 276 VPCPPAPPLWLPSPSVPSSLALHVPLFHASSLERWSPTAL 315
>11_01_0074 +
582210-582434,582521-582712,582785-582950,584013-584404
Length = 324
Score = 27.1 bits (57), Expect = 4.8
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 43 ASLK*RNESIGSPTFXVGVFREXRDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 198
ASL N +I PT + G SQ V + G+HT G + C+ F
Sbjct: 157 ASLSGANNNIPPPTSGLANLTSLFAAQGLSQKDMVALSGSHTIGQAR-CTNF 207
>08_02_1285 - 25881091-25881798
Length = 235
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 106 EXRDGAGCSQAPPVRVQGAHTSGPG 180
E DG G ++A V +GAH +G G
Sbjct: 173 EEEDGEGSAEAMEVEEEGAHLAGAG 197
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 318 PPPRTRGIRATARPVPHDSA 259
PPPRTR + PVP SA
Sbjct: 166 PPPRTRQVNPAPPPVPSPSA 185
>10_07_0029 + 12031711-12032464,12044289-12044386
Length = 283
Score = 26.6 bits (56), Expect = 6.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 371 YVHHDTCYRRHPDR 330
Y+ HDT YR HP R
Sbjct: 94 YIFHDTAYRYHPRR 107
>09_06_0153 - 21243108-21245660
Length = 850
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 129 APCTVSXFSEYTDXKGRATDRLISLL*RSYTSEIYTNSGDK 7
APCTV F++ +G A+ RL + + S + N GD+
Sbjct: 612 APCTVGVFADRPFWRGGASFRLPTKISTSEETTAARNQGDQ 652
>07_01_1064 +
9385330-9385432,9386181-9386236,9386938-9387082,
9387126-9387298,9388058-9388129,9388222-9388336,
9388418-9388521,9388604-9388645,9388932-9389144,
9389621-9389689
Length = 363
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +2
Query: 170 PDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIP 301
PD++ + H+ + KN R +A +G G VA++P
Sbjct: 63 PDVIQNYHLCVVKNRRLDSDTIAKASQMKIIMQYGVGLEVAQLP 106
>03_01_0147 - 1170481-1171260,1171332-1171511
Length = 319
Score = 26.6 bits (56), Expect = 6.3
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 37 GIASLK*R-NESIGSPTFXVGVFREXRDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 198
G ASL+ ++I +PTF + + G +Q V + GAHT G C+ F
Sbjct: 139 GTASLEPEVADNIPAPTFTLDQLTQSFAAKGLTQEEMVTLSGAHTVGRAH-CTSF 192
>02_05_1186 +
34816774-34817055,34817216-34817334,34818139-34818664,
34818760-34818977,34819639-34819966
Length = 490
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = -3
Query: 351 LPKAP*PDLWVPPPRTRG--IRATARP--VPHDSALVW 250
LP+ +L PPP T+G +R +A P +PH+ +W
Sbjct: 60 LPRLADGELSPPPPSTKGLFLRLSAAPLLLPHELTSMW 97
>09_01_0086 -
1225132-1225299,1225530-1225679,1227629-1228006,
1229103-1229150
Length = 247
Score = 26.2 bits (55), Expect = 8.4
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -1
Query: 197 KREHH*PGPDVWAP*TRTGGAWLHPAPSRSSLNTPTXKVGLPIDSF 60
+ EHH P P + WLH APS + + K G+ D F
Sbjct: 159 RSEHH--RPKAGTPHCTSCHCWLHNAPSLTCSLSCKKKAGISSDDF 202
>07_01_0469 - 3552409-3553368
Length = 319
Score = 26.2 bits (55), Expect = 8.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 371 YVHHDTCYRRHPDR 330
Y+ HDT YR HP R
Sbjct: 94 YIFHDTAYRFHPRR 107
>04_01_0244 - 3194141-3195091,3195301-3195312
Length = 320
Score = 26.2 bits (55), Expect = 8.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 371 YVHHDTCYRRHPDR 330
Y+ HDT YR HP R
Sbjct: 98 YIFHDTAYRFHPRR 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,128,512
Number of Sequences: 37544
Number of extensions: 263407
Number of successful extensions: 890
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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