Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2325
(374 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 138 9e-34
Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical pr... 28 1.9
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 27 4.4
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 27 4.4
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr... 27 5.8
U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical p... 27 5.8
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr... 26 7.6
Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical pr... 26 7.6
Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical pr... 26 7.6
AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical... 26 7.6
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 138 bits (335), Expect = 9e-34
Identities = 66/99 (66%), Positives = 76/99 (76%)
Frame = +2
Query: 77 ARPLXSVYSEKXETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 256
ARPL +VY EK E Q + LP VF+ PIRPDLV+ + + +N RQ + V+ +AG Q
Sbjct: 3 ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61
Query: 257 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRM 373
SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG M
Sbjct: 62 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHM 100
>Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical
protein F40F8.11 protein.
Length = 472
Score = 28.3 bits (60), Expect = 1.9
Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Frame = +2
Query: 209 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGR 370
N R V K H+ SW T + R GGG R SG G RGGR
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGR 193
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 27.1 bits (57), Expect = 4.4
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -3
Query: 366 PPRHMLPKAP*PDLWVPPPRTRGIRATAR-PVPH 268
PP P AP P +++PPP G R P+ H
Sbjct: 160 PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 27.1 bits (57), Expect = 4.4
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -3
Query: 366 PPRHMLPKAP*PDLWVPPPRTRGIRATAR-PVPH 268
PP P AP P +++PPP G R P+ H
Sbjct: 160 PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193
>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical
protein K03H1.5 protein.
Length = 1385
Score = 26.6 bits (56), Expect = 5.8
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +1
Query: 274 YRTCCRPNSSCPWWWYP*VRSGC 342
YRTCC+ C ++++ + +GC
Sbjct: 823 YRTCCKYADHCEFYYWRRMTNGC 845
>U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical
protein ZK180.6 protein.
Length = 701
Score = 26.6 bits (56), Expect = 5.8
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 296 IPRVRGGGTHRSGQGAFGNMCRGG 367
+P GGG S Q A GN C GG
Sbjct: 26 LPGAGGGGCCSSAQPACGNPCGGG 49
>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical
protein F26H11.2c protein.
Length = 2266
Score = 26.2 bits (55), Expect = 7.6
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 369 RPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDS 262
RP R LPK D + PPP + RA R P D+
Sbjct: 91 RPRRSRLPKRYFDDGYSPPPTKK--RAAQRETPSDA 124
>Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical
protein F26H11.2b protein.
Length = 1693
Score = 26.2 bits (55), Expect = 7.6
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 369 RPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDS 262
RP R LPK D + PPP + RA R P D+
Sbjct: 91 RPRRSRLPKRYFDDGYSPPPTKK--RAAQRETPSDA 124
>Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical
protein F26H11.2a protein.
Length = 1691
Score = 26.2 bits (55), Expect = 7.6
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 369 RPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDS 262
RP R LPK D + PPP + RA R P D+
Sbjct: 91 RPRRSRLPKRYFDDGYSPPPTKK--RAAQRETPSDA 124
>AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical
protein Y53F4B.36 protein.
Length = 297
Score = 26.2 bits (55), Expect = 7.6
Identities = 12/58 (20%), Positives = 24/58 (41%)
Frame = +2
Query: 62 MSLSVARPLXSVYSEKXETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 235
MS++V P S V + + F++ P ++ D H+ + + CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,455,656
Number of Sequences: 27780
Number of extensions: 178978
Number of successful extensions: 480
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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