Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2323
         (700 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK022007-1|BAB13952.1|  602|Homo sapiens protein ( Homo sapiens ...    31   3.0  
AJ224877-1|CAB82785.1|  560|Homo sapiens Huntingtin Associated P...    31   3.0  
AJ012824-1|CAC09418.1|  671|Homo sapiens huntingtin-associated p...    31   3.0  
AF040723-1|AAC39861.1|  619|Homo sapiens neuroan1 protein.             31   3.0  
AB209105-1|BAD92342.1|  593|Homo sapiens huntingtin-associated p...    31   3.0  
AL157766-1|CAI13922.2| 4432|Homo sapiens spastic ataxia of Charl...    30   9.1  
AK096419-1|BAC04782.1|  520|Homo sapiens protein ( Homo sapiens ...    30   9.1  
AF193556-1|AAF31262.1| 3829|Homo sapiens sacsin protein.               30   9.1  

>AK022007-1|BAB13952.1|  602|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11945 fis, clone HEMBB1000693, highly similar to
           Homo sapiens neuroan1 mRNA. ).
          Length = 602

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 11/45 (24%), Positives = 28/45 (62%)
 Frame = -3

Query: 680 EESLRMNLISDSAMFAGVGVEHSSRDFTIQEVISSTFAHFSTRLK 546
           +E+ RMN+++ +   +G+G  H   ++ +Q++ +   AH+  +L+
Sbjct: 531 DEATRMNVVTSALEASGLGPSHLDMNYVLQQLANWQDAHYRRQLR 575


>AJ224877-1|CAB82785.1|  560|Homo sapiens Huntingtin Associated
           Protein protein.
          Length = 560

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 11/45 (24%), Positives = 28/45 (62%)
 Frame = -3

Query: 680 EESLRMNLISDSAMFAGVGVEHSSRDFTIQEVISSTFAHFSTRLK 546
           +E+ RMN+++ +   +G+G  H   ++ +Q++ +   AH+  +L+
Sbjct: 489 DEATRMNVVTSALEASGLGPSHLDMNYVLQQLANWQDAHYRRQLR 533


>AJ012824-1|CAC09418.1|  671|Homo sapiens huntingtin-associated
           protein 1 protein.
          Length = 671

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 11/45 (24%), Positives = 28/45 (62%)
 Frame = -3

Query: 680 EESLRMNLISDSAMFAGVGVEHSSRDFTIQEVISSTFAHFSTRLK 546
           +E+ RMN+++ +   +G+G  H   ++ +Q++ +   AH+  +L+
Sbjct: 600 DEATRMNVVTSALEASGLGPSHLDMNYVLQQLANWQDAHYRRQLR 644


>AF040723-1|AAC39861.1|  619|Homo sapiens neuroan1 protein.
          Length = 619

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 11/45 (24%), Positives = 28/45 (62%)
 Frame = -3

Query: 680 EESLRMNLISDSAMFAGVGVEHSSRDFTIQEVISSTFAHFSTRLK 546
           +E+ RMN+++ +   +G+G  H   ++ +Q++ +   AH+  +L+
Sbjct: 548 DEATRMNVVTSALEASGLGPSHLDMNYVLQQLANWQDAHYRRQLR 592


>AB209105-1|BAD92342.1|  593|Homo sapiens huntingtin-associated
           protein 1 isoform 2 variant protein.
          Length = 593

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 11/45 (24%), Positives = 28/45 (62%)
 Frame = -3

Query: 680 EESLRMNLISDSAMFAGVGVEHSSRDFTIQEVISSTFAHFSTRLK 546
           +E+ RMN+++ +   +G+G  H   ++ +Q++ +   AH+  +L+
Sbjct: 522 DEATRMNVVTSALEASGLGPSHLDMNYVLQQLANWQDAHYRRQLR 566


>AL157766-1|CAI13922.2| 4432|Homo sapiens spastic ataxia of
            Charlevoix-Saguenay (sacsin) protein.
          Length = 4432

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 550  SLVEKCAKVDEMTSCIVKSLEECSTPTPANMAESLIKFMRKDSSCH 687
            +LV  C +   +  C++ +    S  TPA++   L+ F   D++CH
Sbjct: 2921 NLVYNCDETANLYHCLIDADIPVSYVTPADIRSFLMTFSSPDTNCH 2966


>AK096419-1|BAC04782.1|  520|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39100 fis, clone NTONG2001587, moderately
           similar to KERATIN, TYPE II CYTOSKELETAL 4. ).
          Length = 520

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 469 QQKTENLKTCFLNLKQSFPTVESANNLSLVEKCAKVDEMTSCI 597
           Q +TENLK    +L+ +    E    L+L +  AKVDE+ + +
Sbjct: 340 QSQTENLKKQNASLQAAITDAEQRGELALKDAQAKVDELEAAL 382


>AF193556-1|AAF31262.1| 3829|Homo sapiens sacsin protein.
          Length = 3829

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 550  SLVEKCAKVDEMTSCIVKSLEECSTPTPANMAESLIKFMRKDSSCH 687
            +LV  C +   +  C++ +    S  TPA++   L+ F   D++CH
Sbjct: 2318 NLVYNCDETANLYHCLIDADIPVSYVTPADIRSFLMTFSSPDTNCH 2363


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,108,249
Number of Sequences: 237096
Number of extensions: 1973785
Number of successful extensions: 5105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5105
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)