Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2318
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    33   0.033
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    31   0.23 
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ...    29   0.94 
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    28   1.6  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    28   1.6  
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    27   2.2  
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    26   5.0  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    25   8.7  
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    25   8.7  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   8.7  

>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 33.5 bits (73), Expect = 0.033
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 203 ESKKIQCTRFMSGNCSFGPICRYSH 277
           E+++  C  F+ GNC FGP C  SH
Sbjct: 68  ETERPICKYFLKGNCKFGPKCALSH 92



 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +2

Query: 98  ATPAIIKTHNKGLEHQKLVHEHYQEYKDPETII--LEESKKIQCTRFMSGNCSFGPICRY 271
           A+ AI K  +  L  QK   +       PE  +  ++  + + C  F +G C+ G  C +
Sbjct: 4   ASSAIPKRSDPRLLDQKKSAKSTLPKNTPENGVSTVKNLQHVPCKFFRNGTCTAGENCPF 63

Query: 272 SHYTKEE 292
           SH  + E
Sbjct: 64  SHSLETE 70


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 728 SNLLLLGSVICXSRCPVLFLNAKIVIYFGLKGKYCVISYTNAPS 597
           + LL    V+C S  P   L  +  +Y     K+C++ YTN+PS
Sbjct: 20  NGLLQAKVVVCKSVNPYFNLALENYLYENSTAKHCLLLYTNSPS 63


>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 170

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 197 LEESKKIQ-CTRFMSGNCSFGPICRYSHYTK 286
           L+ SK++  C  +  G C  GPICR  H  K
Sbjct: 102 LDPSKQVGVCAWYNMGFCPLGPICRGKHVRK 132


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 95  VATPAIIKTHNKGLEHQKLVHEHYQEYKDPETIILEESKK 214
           ++ P ++  H   L H+K  +  Y   KDPE ++ E + +
Sbjct: 888 ISYPCVMLNH---LVHEKFTNHQYSALKDPEKLVYETTSE 924


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 206 SKKIQCTRFMSGNCSFGPICRYSH 277
           ++K  C  F  GNC FG  C   H
Sbjct: 65  TEKTICKYFQKGNCKFGSKCALEH 88



 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
 Frame = +2

Query: 161 HYQEYKDPETIILEESKK----IQCTRFMSGNCSFGPICRYSH 277
           H  E+    T +   S K    + C  F  G C+ G  C +SH
Sbjct: 17  HLSEFNSEATSLTRPSPKSLQHVPCKFFRQGTCTSGKNCIFSH 59


>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 475 IVHPRQEMCPPVRINYESFAL 413
           ++HPR  M P   +NY  F L
Sbjct: 106 VIHPRNPMAPTTHLNYRYFEL 126


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 221 CTRFMSGNCSFGPICRYSHYTKEELDNLN 307
           C  F  G CS G  C Y H   ++ D  N
Sbjct: 117 CLYFARGMCSEGSKCEYLHRLPKDTDFFN 145


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -3

Query: 247 TISTHKSGALNFFTLF*YNSLWIFIFLIVFM--YQFLMFQSFIVCFYYCRRSNHRLIAVI 74
           T+   +   L+FFTLF    ++I  F I  +      +  + ++ + Y RR       +I
Sbjct: 212 TLQQFQGKTLHFFTLFSGIGIFIITFFISLLIGVSIGLITALLLKYSYLRRYPSIESCII 271

Query: 73  TVILFTHFIF 44
            ++ +T + F
Sbjct: 272 LLMAYTSYFF 281


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = -3

Query: 220 LNFFTLF*YNSLWIFIFLIVFMYQFLMFQSFIVCFYYCRRSNHRL-IAVITVILFTHFIF 44
           L+F+T+   +S+ IF+F    +++  MF   ++C      +   L +A  T  + + F+ 
Sbjct: 150 LSFYTMC-RSSILIFVFFFSVIFRIEMFDWILLCITLVISAGVVLMVATETQFVLSGFLL 208

Query: 43  VVS*SI 26
           V++ S+
Sbjct: 209 VMASSV 214


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 101 TPAIIKTHNKGLEHQKLVHEHYQEYKDPET 190
           TP I   +NKG   ++L+H  +  Y D  T
Sbjct: 470 TPIIFVINNKGYTIERLIHGLHAVYNDINT 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,001,080
Number of Sequences: 5004
Number of extensions: 63429
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)