Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2318
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0759 - 36059872-36059928,36059934-36060125,36060241-360603... 33 0.24
03_06_0523 + 34499533-34499705,34499808-34499917,34500037-345002... 32 0.56
12_02_0008 + 12239759-12239923,12240404-12240443,12241278-122414... 31 0.74
06_02_0136 + 12195422-12195435,12196047-12196122,12196896-121977... 31 0.74
02_05_0300 + 27681204-27681656,27681745-27681840,27681933-276820... 31 0.74
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 31 0.74
11_04_0274 - 15667178-15667444,15668352-15668678,15669430-156695... 31 0.98
07_01_0281 - 2067696-2068862 30 2.3
04_04_1500 + 34010819-34011016,34013267-34013308,34014195-340142... 29 3.0
01_06_1805 - 39999987-40000169,40000648-40000974,40001724-400020... 29 3.0
09_02_0357 + 7788946-7789326,7789620-7789997 29 5.2
06_03_1309 + 29223197-29223240,29223358-29223592,29223695-292237... 29 5.2
01_05_0707 - 24468329-24468448,24468794-24468940,24469050-244691... 29 5.2
02_01_0703 + 5251901-5251950,5252783-5253554 28 6.9
06_03_0766 - 24425486-24426245,24430766-24430855,24430951-244310... 28 9.1
>03_06_0759 -
36059872-36059928,36059934-36060125,36060241-36060348,
36060440-36060712,36060923-36061009,36061085-36061276,
36061841-36061969,36062087-36062200,36062446-36062490,
36062785-36062956,36063229-36063515,36063989-36064456
Length = 707
Score = 33.1 bits (72), Expect = 0.24
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = -3
Query: 235 HKSGALNFFTLF*YNSLWIFIFLIVFMYQFLMFQSFIVCFYYCRRSNHRLIAVITVI 65
H ++ F L +S +F FLI +F +F F+V + C +N L+ ++ I
Sbjct: 518 HFLSSIPFLFLVTISSSLVFYFLIGLRNEFNLFMYFVVTMFMCLLANEALMMIVAYI 574
>03_06_0523 +
34499533-34499705,34499808-34499917,34500037-34500224,
34500984-34501451
Length = 312
Score = 31.9 bits (69), Expect = 0.56
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = +2
Query: 158 EHYQEYKDPETIILEESKKIQ-----CTRFMSGNCSFGPICRYSH 277
+H +YK E EE +K + C F G C+ G CRYSH
Sbjct: 110 DHVSKYKKKEEEDEEELQKKREARGVCYAFQKGECNRGASCRYSH 154
>12_02_0008 +
12239759-12239923,12240404-12240443,12241278-12241435,
12242400-12242462,12243149-12243268,12243388-12243684,
12245012-12245335,12246411-12246680
Length = 478
Score = 31.5 bits (68), Expect = 0.74
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 185 ETIILEESKKIQCTRFM-SGNCSFGPICRYSHYTKEEL 295
E I E + +C +M +G+C FG +C++ H+ KE L
Sbjct: 336 ENIFPERPDQPECQFYMKTGDCKFGAVCKF-HHPKERL 372
>06_02_0136 +
12195422-12195435,12196047-12196122,12196896-12197707,
12197941-12198010,12199469-12199557,12199633-12199666
Length = 364
Score = 31.5 bits (68), Expect = 0.74
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 221 CTRFMSGNCSFGPICRYSH 277
CT + G+CS+G CRY H
Sbjct: 32 CTFYQKGSCSYGSRCRYDH 50
>02_05_0300 +
27681204-27681656,27681745-27681840,27681933-27682022,
27682126-27682227,27682310-27682456,27683608-27683748,
27683749-27683808,27685133-27685230,27685308-27685410,
27685954-27686037
Length = 457
Score = 31.5 bits (68), Expect = 0.74
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 221 CTRFMSGNCSFGPICRYSH 277
C F++G+CS+G CRY H
Sbjct: 114 CRYFLAGDCSYGEKCRYPH 132
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 31.5 bits (68), Expect = 0.74
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +2
Query: 101 TPAIIKTHNKGLEHQKLVHEHYQEYKDPET 190
+P++ K HN G +H+ V +YQ++++ +T
Sbjct: 17 SPSVRKQHNAGYKHKANVRTYYQQFEEQQT 46
>11_04_0274 -
15667178-15667444,15668352-15668678,15669430-15669563,
15669669-15669726,15669842-15669961,15670814-15670876,
15671388-15671539,15673002-15673116,15673907-15673981,
15674474-15674538,15675020-15675128
Length = 494
Score = 31.1 bits (67), Expect = 0.98
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 185 ETIILEESKKIQCTRFM-SGNCSFGPICRYSHYTKEEL 295
E+I E + +C +M +G+C FG +C++ H+ KE +
Sbjct: 353 ESIFPERPDQPECQFYMKTGDCKFGAVCKF-HHPKERI 389
>07_01_0281 - 2067696-2068862
Length = 388
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 221 CTRFMSGNCSFGPICRYSHYTKEE 292
C+++ G C G CRYSH +E+
Sbjct: 327 CSKWRKGRCHNGAACRYSHGEEEQ 350
>04_04_1500 +
34010819-34011016,34013267-34013308,34014195-34014204,
34014526-34014586,34014621-34014678,34015266-34015412,
34015643-34016205,34018942-34019728
Length = 621
Score = 29.5 bits (63), Expect = 3.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 221 CTRFMSGNCSFGPICRYSHYTKEE 292
C F+ G C+FG C ++H E+
Sbjct: 593 CENFVKGTCTFGDRCHFAHGENEQ 616
>01_06_1805 -
39999987-40000169,40000648-40000974,40001724-40002017,
40002112-40002231,40002714-40002776,40003150-40003310,
40003864-40004035
Length = 439
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 185 ETIILEESKKIQCTRFM-SGNCSFGPICRYSH 277
E + E + +C +M +G+C FG +C++ H
Sbjct: 326 ENVFPERPDQPECQYYMKTGDCKFGAVCKFHH 357
>09_02_0357 + 7788946-7789326,7789620-7789997
Length = 252
Score = 28.7 bits (61), Expect = 5.2
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +2
Query: 209 KKIQCTRFMSGNCSFGPICRYSHYTKEE 292
K + C ++ G C G CRY+H +++
Sbjct: 37 KSVLCMKWREGRCHNGVACRYAHGEEDQ 64
>06_03_1309 +
29223197-29223240,29223358-29223592,29223695-29223783,
29223870-29223968,29224065-29224158,29224297-29224514,
29224861-29224967,29225298-29225472,29225596-29225743,
29226548-29226596,29228016-29228162,29229990-29229996,
29230417-29230482,29230773-29231991,29232073-29233149,
29233226-29233355,29233519-29233617,29233817-29233878,
29234429-29234533
Length = 1389
Score = 28.7 bits (61), Expect = 5.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 221 CTRFMSGNCSFGPICRYSH 277
C F G+C +G CRY H
Sbjct: 8 CRNFQRGSCKYGAQCRYLH 26
>01_05_0707 -
24468329-24468448,24468794-24468940,24469050-24469103,
24469185-24469300,24470537-24470583,24470686-24470723,
24471050-24471268,24471504-24471602,24471675-24471728,
24472907-24473148,24474258-24474447
Length = 441
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 161 HYQEYKDPETIILEESKKIQCTRFM-SGNCSFGPICRYSHYTKEELDNL 304
+++E + E E+ + C FM +G C FG C+++H KE+++ L
Sbjct: 141 NWKEAANVEESYPEQEGEPDCPFFMKTGKCKFGSKCKFNH-PKEKVNAL 188
>02_01_0703 + 5251901-5251950,5252783-5253554
Length = 273
Score = 28.3 bits (60), Expect = 6.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 221 CTRFMSGNCSFGPICRYSHYTKE 289
C F G+C+FG C ++H E
Sbjct: 244 CENFTKGSCTFGDRCHFAHGENE 266
>06_03_0766 -
24425486-24426245,24430766-24430855,24430951-24431070,
24431568-24431746,24432046-24432231,24432454-24432547,
24432679-24432743,24433652-24433987
Length = 609
Score = 27.9 bits (59), Expect = 9.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 221 CTRFMSGNCSFGPICRYSHYTKE 289
C F G+C+FG C ++H E
Sbjct: 579 CENFNKGSCTFGDRCHFAHGESE 601
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,956,851
Number of Sequences: 37544
Number of extensions: 358707
Number of successful extensions: 769
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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