Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2318
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-11|CAB11564.2|  335|Caenorhabditis elegans Hypothetical p...    36   0.023
U62896-1|AAB17868.1|  335|Caenorhabditis elegans PIE-1 protein.        36   0.023
U41007-19|AAA82274.1|  432|Caenorhabditis elegans Hypothetical p...    33   0.16 
Z74476-2|CAA98962.1|  200|Caenorhabditis elegans Hypothetical pr...    32   0.50 
U52002-6|AAB37732.1|  142|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF016423-2|AAB65323.2|   92|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z48585-8|CAA88484.1|  142|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AC006777-6|AAK72307.1|  517|Caenorhabditis elegans Hypothetical ...    29   3.5  
U41109-13|AAB37036.1|  264|Caenorhabditis elegans Posterior segr...    29   4.7  
AF016665-8|AAC71178.1|  324|Caenorhabditis elegans Serpentine re...    29   4.7  
AB006208-1|BAA33854.1|  264|Caenorhabditis elegans cytoplasmic z...    29   4.7  
Z29115-4|CAA82364.1|  125|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AF016422-8|AAW88392.1|  289|Caenorhabditis elegans Serpentine re...    28   6.2  
Z81495-8|CAB04063.1|  239|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z50742-5|CAA90618.2|  650|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z98866-11|CAB11564.2|  335|Caenorhabditis elegans Hypothetical
           protein Y49E10.14 protein.
          Length = 335

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 158 EHYQEYKDPETIILEESKKIQCTRFMSGNCSFGPICRYSHYTKEELDNLN 307
           +H+ E + P       +++  C  F  GNC +GP CR+ H  + +  N N
Sbjct: 169 KHHDENRRPSNNHGSSNRRQICHNFERGNCRYGPRCRFIHVEQMQHFNAN 218


>U62896-1|AAB17868.1|  335|Caenorhabditis elegans PIE-1 protein.
          Length = 335

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 158 EHYQEYKDPETIILEESKKIQCTRFMSGNCSFGPICRYSHYTKEELDNLN 307
           +H+ E + P       +++  C  F  GNC +GP CR+ H  + +  N N
Sbjct: 169 KHHDENRRPSNNHGSSNRRQICHNFERGNCRYGPRCRFIHVEQMQHFNAN 218


>U41007-19|AAA82274.1|  432|Caenorhabditis elegans Hypothetical
           protein C33H5.17 protein.
          Length = 432

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 221 CTRFMSGNCSFGPICRYSHYTKEELDNL 304
           CT F+S +C F   CR+SH    EL+ +
Sbjct: 124 CTHFLSSSCKFNENCRFSHGYSVELERI 151


>Z74476-2|CAA98962.1|  200|Caenorhabditis elegans Hypothetical
           protein W05B10.2 protein.
          Length = 200

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 203 ESKKIQCTRFMSGNCSFGPICRYSH 277
           +  K  C  ++ G C FG  CR+SH
Sbjct: 133 KKSKFTCKNYLKGKCRFGDKCRFSH 157


>U52002-6|AAB37732.1|  142|Caenorhabditis elegans Hypothetical
           protein F08B4.7 protein.
          Length = 142

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +2

Query: 101 TPAIIKTHNKGLEHQKLVHEHYQEY-KDPETIILEESKKIQCTRFMSG 241
           +P++ KTHN G +H+  V   YQ++ +D    +++++ +   T  M G
Sbjct: 17  SPSVRKTHNGGRKHKDNVRMFYQKWMEDQAQKLVDQTARAFATNRMQG 64


>AF016423-2|AAB65323.2|   92|Caenorhabditis elegans Hypothetical
           protein F40A3.4 protein.
          Length = 92

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = -3

Query: 175 IFLIVFMYQFLMFQSFIVCFYYCRRSNH 92
           + L++ +   ++   F++CF++CRR+N+
Sbjct: 48  VALLLIVIALIIIAVFLICFFHCRRANN 75


>Z48585-8|CAA88484.1|  142|Caenorhabditis elegans Hypothetical
           protein ZK673.10 protein.
          Length = 142

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 620 ISYTNAPSDAFIKNTYIFQFIPNE*EDNTY 531
           + Y+  PS AF  N  IFQF P     NT+
Sbjct: 1   MEYSQIPSFAFYNNASIFQFFPRNKRLNTH 30


>AC006777-6|AAK72307.1|  517|Caenorhabditis elegans Hypothetical
           protein Y46H3D.4 protein.
          Length = 517

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = -3

Query: 220 LNFFTLF*YNSLWIFIFLIVFMYQFLMFQSFIV 122
           LNFF LF  NS+ IF  L VF+  F    SF+V
Sbjct: 478 LNFFILFSNNSILIFFILKVFVI-FYSEHSFLV 509


>U41109-13|AAB37036.1|  264|Caenorhabditis elegans Posterior
           segregation protein 1 protein.
          Length = 264

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 209 KKIQCTRF-MSGNCSFGPICRYSH 277
           K + C +F M+GNC +G  C++ H
Sbjct: 143 KTVLCDKFSMTGNCKYGTRCQFIH 166


>AF016665-8|AAC71178.1|  324|Caenorhabditis elegans Serpentine
           receptor, class h protein250 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/80 (18%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
 Frame = -3

Query: 259 WSERTISTHKSGALNFFTLF*YNSLWIFI------FLIVFMYQFLMFQSFIVCFYYCRRS 98
           +S RT+   K+  ++    F +   ++FI      ++++F Y   +  +FI+  + C  +
Sbjct: 226 YSYRTVRVQKNFLVSMSLQFVFIMTFMFIPCVLLLYIVIFKYHNQILNNFIIILFSCFGT 285

Query: 97  NHRLIAVITVILFTHFIFVV 38
              ++ ++    +  F F+V
Sbjct: 286 GSTVVIILVYKPYREFAFLV 305


>AB006208-1|BAA33854.1|  264|Caenorhabditis elegans cytoplasmic
           zinc-finger protein protein.
          Length = 264

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 209 KKIQCTRF-MSGNCSFGPICRYSH 277
           K + C +F M+GNC +G  C++ H
Sbjct: 143 KTVLCDKFSMTGNCKYGTRCQFIH 166


>Z29115-4|CAA82364.1|  125|Caenorhabditis elegans Hypothetical
           protein T26G10.5 protein.
          Length = 125

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 214 FFTLF*YNSLWIFIFLIVFMYQFLMFQSFIV-CFYYCRRSNHRLI 83
           FF  F   + WI  ++ + M++  +  SFIV C       +HR +
Sbjct: 24  FFRFFFLGNSWISYYIKIMMFRLFLLISFIVLCHSIVSEISHRFL 68


>AF016422-8|AAW88392.1|  289|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 60 protein.
          Length = 289

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -3

Query: 220 LNFFTLF*YNSLWIF-IFLIVFMYQFLMFQSFIVCFYYCRRSNHRLIAVITVILFTHFIF 44
           L+FF  +   +L  F +FL+ FM    +F SF   +Y+  RS H   A I +++  + +F
Sbjct: 80  LSFFIAWPTFNLGSFRVFLVFFMTSDRVFASFFPIYYHKYRS-HCPTATILLLMCAYTVF 138


>Z81495-8|CAB04063.1|  239|Caenorhabditis elegans Hypothetical
           protein F08G2.8 protein.
          Length = 239

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +2

Query: 347 PEPSLENLYEQLQNEKSNDLTVQSETLIVD 436
           P+P  + + EQ  +EK ++L V+S+ +++D
Sbjct: 46  PDPFADMMNEQSLDEKLDELDVESQEIVID 75


>Z50742-5|CAA90618.2|  650|Caenorhabditis elegans Hypothetical
           protein K09A11.5 protein.
          Length = 650

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 369 CMNNCKMKSQTISLCRAKLS*LMRTGGHISCLGCTI 476
           C N+CK  SQ +S  +A+ + ++   G +  +GC +
Sbjct: 608 CQNSCKCVSQLLSYPKAEKTCIILEDGDLIQIGCIV 643


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,476,256
Number of Sequences: 27780
Number of extensions: 357450
Number of successful extensions: 1138
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)