Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2317
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    82   3e-17
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    82   4e-17
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   0.80 
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    25   3.2  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    25   4.3  
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    25   4.3  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   4.3  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    24   9.8  

>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 82.2 bits (194), Expect = 3e-17
 Identities = 42/80 (52%), Positives = 55/80 (68%)
 Frame = +3

Query: 66  KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLXVSKDKRALKFLK 245
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R MEL+  S+DKRA K  K
Sbjct: 13  KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 246 RRLGTHXRAKRKREELXNVL 305
           +RLGT  RAK K EEL +V+
Sbjct: 73  KRLGTLKRAKGKIEELTSVI 92


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 81.8 bits (193), Expect = 4e-17
 Identities = 42/80 (52%), Positives = 55/80 (68%)
 Frame = +3

Query: 66  KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLXVSKDKRALKFLK 245
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R MEL+  S+DKRA K  K
Sbjct: 13  KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 246 RRLGTHXRAKRKREELXNVL 305
           +RLGT  RAK K EEL +V+
Sbjct: 73  KRLGTLKRAKGKIEELTSVI 92


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 990

 Score = 27.5 bits (58), Expect = 0.80
 Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
 Frame = +2

Query: 152  STRSCRTRSI*EEGY---GVT*XVKRQACSEVLEATI 253
            +TR+C T+S+ EEG+    V+  +KR+  +++L+A I
Sbjct: 928  ATRACLTQSLEEEGFPSRNVSNEIKRRFLTDLLKARI 964


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 150 LVREVVGHAQYEKRAMELLXVSKDKRALKFLKRRL 254
           ++RE +G   + K  +     ++ K ALKF+ R+L
Sbjct: 35  IIRETLGEGSFGKVKLATHYKTQQKVALKFISRQL 69


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -3

Query: 223 LSFDTLSNSIALFSY*ACPTTS 158
           +S+D+LS+ +++ S+  CP T+
Sbjct: 79  MSYDSLSDDVSVLSFLDCPLTT 100


>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 96  RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 200
           RPA L+ L+T  SKFV  +    V    Y K  ++
Sbjct: 27  RPANLQFLKTNSSKFVPQVTAN-VSRRMYHKNVLD 60


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 211 TLSNSIALFSY*ACPTTSRTKSRTNLECF 125
           T+++S  LF+  A   T+ TKS  N+EC+
Sbjct: 850 TINHSRTLFATHAHQLTNLTKSFKNVECY 878


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
 Frame = +3

Query: 33  GHKTTKISAGRKGITDKAIRIRPARLKGL------QTKHSKFV-RDLVREVVGHAQYEKR 191
           G+   K S      TDK   I+P  LKGL       TK ++ + RDL+R V+G    E +
Sbjct: 730 GNPVDKNSTSPSKSTDKLDPIKPVFLKGLFSVSTTSTKSTESIQRDLIR-VMGMLDIEYK 788

Query: 192 AME 200
            ++
Sbjct: 789 EIK 791


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,372,446
Number of Sequences: 5004
Number of extensions: 22709
Number of successful extensions: 58
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)