Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2317
(396 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018 96 8e-21
01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772... 96 8e-21
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 33 0.11
01_05_0797 + 25313226-25313330,25313464-25313545,25317573-253176... 32 0.15
07_03_0078 - 13147741-13148913 30 0.59
11_02_0038 - 7631462-7634428,7635975-7636250 27 7.2
09_01_0024 + 438288-438542,439020-439069,440096-440351 26 9.6
07_03_0337 + 16918613-16919078,16921610-16921725,16922039-169222... 26 9.6
>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
Length = 113
Score = 96.3 bits (229), Expect = 8e-21
Identities = 54/106 (50%), Positives = 63/106 (59%)
Frame = +3
Query: 18 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 197
VG+ KGH TK + + RP+ KG TK FVR+L+REV G A YEKR
Sbjct: 12 VGINKGHVVTK----------RELPPRPSDRKGKSTKRVTFVRNLIREVAGFAPYEKRIT 61
Query: 198 ELLXVSKDKRALKFLKRRLGTHXRAKRKREELXNVLAHMXKAXDQA 335
ELL V KDKRALK KR+LGTH RAK+KREE+ VL M A
Sbjct: 62 ELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVLRKMRSGGGHA 107
>01_06_1294 -
36076524-36076554,36076821-36076891,36077221-36077275,
36077363-36077562,36078614-36078715
Length = 152
Score = 96.3 bits (229), Expect = 8e-21
Identities = 53/99 (53%), Positives = 62/99 (62%)
Frame = +3
Query: 18 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 197
VG+ KGH TK + + RP+ KG TK FVR L+REVVG A YEKR
Sbjct: 12 VGINKGHVVTK----------RELPPRPSDRKGKSTKRVNFVRGLIREVVGFAPYEKRIT 61
Query: 198 ELLXVSKDKRALKFLKRRLGTHXRAKRKREELXNVLAHM 314
ELL V KDKRALK KR+LGTH RAK+KREE+ V+ M
Sbjct: 62 ELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVIRKM 100
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 32.7 bits (71), Expect = 0.11
Identities = 18/89 (20%), Positives = 45/89 (50%)
Frame = +3
Query: 81 KAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLXVSKDKRALKFLKRRLGT 260
+A + + A L+ + S+ ++LV E +G EK+ +ELL + +++ ++LK +
Sbjct: 639 EAYQTKAASLEAVMESASEKEKELV-ESLGQITEEKKKLELLVLEYEEKTEEYLKEKQSL 697
Query: 261 HXRAKRKREELXNVLAHMXKAXDQAXDHD 347
R + + ++ + + K ++ H+
Sbjct: 698 EERLQSQESKVLALEESLVKMGEEKESHE 726
>01_05_0797 +
25313226-25313330,25313464-25313545,25317573-25317660,
25318298-25318331,25318399-25319243,25319278-25319371,
25319432-25319611
Length = 475
Score = 32.3 bits (70), Expect = 0.15
Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 5/135 (3%)
Frame = +3
Query: 3 RFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTK-HSKFVRDLVREVVGHAQ 179
R +I +G++ G T AG KG+ KA +K H +++R VR V ++
Sbjct: 8 RIKIMLGMKGGRGRTSKFAGLKGLLWKAGIAGDEEVKPRGNDIHRRWLR--VRRVEEDSE 65
Query: 180 YE---KRAMELLXVSKDKRALKFLKRRLGTHXRAKRKREELXNVLAHMXKAXD-QAXDHD 347
+ K A +L + + ++AL KR+ + V+AH+ K D Q+ +
Sbjct: 66 TDFSFKDANKLCSLVRKQKALAKKKRKYLAESYVRSDEVSCEKVIAHVEKCFDFQSDGYS 125
Query: 348 H*VINKLIXXXKKKK 392
H ++ + K +K
Sbjct: 126 HHIVQDGLQFFKLQK 140
>07_03_0078 - 13147741-13148913
Length = 390
Score = 30.3 bits (65), Expect = 0.59
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 103 AGLILMALSVIPLRPADILVVLWPF 29
AGL+ AL VIP P + +V WPF
Sbjct: 71 AGLLYFALVVIPALPGVLRLVAWPF 95
>11_02_0038 - 7631462-7634428,7635975-7636250
Length = 1080
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 219 DKRALKFLKRRLGTHXRAKRKREELXNV 302
DK+ LKFL R TH + E++ N+
Sbjct: 791 DKKHLKFLNLRCTTHTKESYTMEDITNI 818
>09_01_0024 + 438288-438542,439020-439069,440096-440351
Length = 186
Score = 26.2 bits (55), Expect = 9.6
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 174 AQYEKRAMELLXVSKDKRALKFLKRRLGTHXRAKRKREELXN 299
A++E R E L ++++ A K LKR+ + ++KR + N
Sbjct: 122 AEFELRREERLKEAEERTAKKRLKRQKKKQRKKEKKRSKTNN 163
>07_03_0337 +
16918613-16919078,16921610-16921725,16922039-16922208,
16922509-16922602,16923371-16923457,16923529-16923609,
16923800-16923925,16924541-16924649,16924723-16924802,
16925401-16925529,16925605-16925705,16926075-16926208,
16926307-16926404,16926488-16926607,16927008-16927022,
16927930-16927957,16928066-16928118,16928446-16928517,
16928605-16928652,16928928-16929033,16929110-16929168,
16929792-16929887,16929942-16929959
Length = 801
Score = 26.2 bits (55), Expect = 9.6
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Frame = +3
Query: 96 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME------LLXVSKDKRALKFLKRRLG 257
R A + L KH K + L ++ + +A E +L V KD + G
Sbjct: 298 RNASIAELTAKHQKQLESLEAQLTEVSAERTKASETIQSLQMLLVEKDSEIAEIEAASTG 357
Query: 258 THXRAKRKREELXNVLAHM 314
R + EEL LAH+
Sbjct: 358 EAARIRAAMEELKGELAHL 376
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,939,222
Number of Sequences: 37544
Number of extensions: 149302
Number of successful extensions: 321
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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