Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2317
         (396 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20543-1|AAA63151.1|  115|Drosophila melanogaster minute(1)1B pr...   150   8e-37
BT029917-1|ABM92791.1|  115|Drosophila melanogaster GH03995p pro...   150   8e-37
AY070831-1|AAL48453.1|  115|Drosophila melanogaster AT29875p pro...   150   8e-37
AL031581-5|CAA20892.1|  115|Drosophila melanogaster EG:115C2.7,F...   150   8e-37
AE014298-77|AAN09021.1|  115|Drosophila melanogaster CG7622-PD, ...   150   8e-37
AE014298-76|AAN09020.1|  115|Drosophila melanogaster CG7622-PC, ...   150   8e-37
AE014298-75|AAF45531.1|  115|Drosophila melanogaster CG7622-PB, ...   150   8e-37
AE014298-74|AAN09019.1|  115|Drosophila melanogaster CG7622-PA, ...   150   8e-37
AY051912-1|AAK93336.1|  801|Drosophila melanogaster LD39933p pro...    29   3.0  
AE014134-2350|AAF53302.2|  800|Drosophila melanogaster CG7110-PB...    29   3.0  
AY051494-1|AAK92918.1|  818|Drosophila melanogaster GH14774p pro...    27   9.0  
AF313621-1|AAL78208.1|  818|Drosophila melanogaster CTCF protein.      27   9.0  
AE014296-1240|AAF50573.2|  818|Drosophila melanogaster CG8591-PA...    27   9.0  

>U20543-1|AAA63151.1|  115|Drosophila melanogaster minute(1)1B
           protein protein.
          Length = 115

 Score =  150 bits (363), Expect = 8e-37
 Identities = 75/112 (66%), Positives = 89/112 (79%), Gaps = 1/112 (0%)
 Frame = +3

Query: 3   RFEIAVGLRKGHKTTKISAGRKGITDKAIR-IRPARLKGLQTKHSKFVRDLVREVVGHAQ 179
           R+E+A+GL KGHKT+KI    K   DK ++ +R +RLK +QT+H+KF+RDLVREVVGHA 
Sbjct: 4   RYELAIGLNKGHKTSKIR-NVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAP 62

Query: 180 YEKRAMELLXVSKDKRALKFLKRRLGTHXRAKRKREELXNVLAHMXKAXDQA 335
           YEKR MELL VSKDKRALKFLKRRLGTH RAKRKREEL N+L  + KA   A
Sbjct: 63  YEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLRKAQTHA 114


>BT029917-1|ABM92791.1|  115|Drosophila melanogaster GH03995p
           protein.
          Length = 115

 Score =  150 bits (363), Expect = 8e-37
 Identities = 75/112 (66%), Positives = 89/112 (79%), Gaps = 1/112 (0%)
 Frame = +3

Query: 3   RFEIAVGLRKGHKTTKISAGRKGITDKAIR-IRPARLKGLQTKHSKFVRDLVREVVGHAQ 179
           R+E+A+GL KGHKT+KI    K   DK ++ +R +RLK +QT+H+KF+RDLVREVVGHA 
Sbjct: 4   RYELAIGLNKGHKTSKIR-NVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAP 62

Query: 180 YEKRAMELLXVSKDKRALKFLKRRLGTHXRAKRKREELXNVLAHMXKAXDQA 335
           YEKR MELL VSKDKRALKFLKRRLGTH RAKRKREEL N+L  + KA   A
Sbjct: 63  YEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLRKAQTHA 114


>AY070831-1|AAL48453.1|  115|Drosophila melanogaster AT29875p
           protein.
          Length = 115

 Score =  150 bits (363), Expect = 8e-37
 Identities = 75/112 (66%), Positives = 89/112 (79%), Gaps = 1/112 (0%)
 Frame = +3

Query: 3   RFEIAVGLRKGHKTTKISAGRKGITDKAIR-IRPARLKGLQTKHSKFVRDLVREVVGHAQ 179
           R+E+A+GL KGHKT+KI    K   DK ++ +R +RLK +QT+H+KF+RDLVREVVGHA 
Sbjct: 4   RYELAIGLNKGHKTSKIR-NVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAP 62

Query: 180 YEKRAMELLXVSKDKRALKFLKRRLGTHXRAKRKREELXNVLAHMXKAXDQA 335
           YEKR MELL VSKDKRALKFLKRRLGTH RAKRKREEL N+L  + KA   A
Sbjct: 63  YEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLRKAQTHA 114


>AL031581-5|CAA20892.1|  115|Drosophila melanogaster
           EG:115C2.7,FBgn0002579;RpL36 protein.
          Length = 115

 Score =  150 bits (363), Expect = 8e-37
 Identities = 75/112 (66%), Positives = 89/112 (79%), Gaps = 1/112 (0%)
 Frame = +3

Query: 3   RFEIAVGLRKGHKTTKISAGRKGITDKAIR-IRPARLKGLQTKHSKFVRDLVREVVGHAQ 179
           R+E+A+GL KGHKT+KI    K   DK ++ +R +RLK +QT+H+KF+RDLVREVVGHA 
Sbjct: 4   RYELAIGLNKGHKTSKIR-NVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAP 62

Query: 180 YEKRAMELLXVSKDKRALKFLKRRLGTHXRAKRKREELXNVLAHMXKAXDQA 335
           YEKR MELL VSKDKRALKFLKRRLGTH RAKRKREEL N+L  + KA   A
Sbjct: 63  YEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLRKAQTHA 114


>AE014298-77|AAN09021.1|  115|Drosophila melanogaster CG7622-PD,
           isoform D protein.
          Length = 115

 Score =  150 bits (363), Expect = 8e-37
 Identities = 75/112 (66%), Positives = 89/112 (79%), Gaps = 1/112 (0%)
 Frame = +3

Query: 3   RFEIAVGLRKGHKTTKISAGRKGITDKAIR-IRPARLKGLQTKHSKFVRDLVREVVGHAQ 179
           R+E+A+GL KGHKT+KI    K   DK ++ +R +RLK +QT+H+KF+RDLVREVVGHA 
Sbjct: 4   RYELAIGLNKGHKTSKIR-NVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAP 62

Query: 180 YEKRAMELLXVSKDKRALKFLKRRLGTHXRAKRKREELXNVLAHMXKAXDQA 335
           YEKR MELL VSKDKRALKFLKRRLGTH RAKRKREEL N+L  + KA   A
Sbjct: 63  YEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLRKAQTHA 114


>AE014298-76|AAN09020.1|  115|Drosophila melanogaster CG7622-PC,
           isoform C protein.
          Length = 115

 Score =  150 bits (363), Expect = 8e-37
 Identities = 75/112 (66%), Positives = 89/112 (79%), Gaps = 1/112 (0%)
 Frame = +3

Query: 3   RFEIAVGLRKGHKTTKISAGRKGITDKAIR-IRPARLKGLQTKHSKFVRDLVREVVGHAQ 179
           R+E+A+GL KGHKT+KI    K   DK ++ +R +RLK +QT+H+KF+RDLVREVVGHA 
Sbjct: 4   RYELAIGLNKGHKTSKIR-NVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAP 62

Query: 180 YEKRAMELLXVSKDKRALKFLKRRLGTHXRAKRKREELXNVLAHMXKAXDQA 335
           YEKR MELL VSKDKRALKFLKRRLGTH RAKRKREEL N+L  + KA   A
Sbjct: 63  YEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLRKAQTHA 114


>AE014298-75|AAF45531.1|  115|Drosophila melanogaster CG7622-PB,
           isoform B protein.
          Length = 115

 Score =  150 bits (363), Expect = 8e-37
 Identities = 75/112 (66%), Positives = 89/112 (79%), Gaps = 1/112 (0%)
 Frame = +3

Query: 3   RFEIAVGLRKGHKTTKISAGRKGITDKAIR-IRPARLKGLQTKHSKFVRDLVREVVGHAQ 179
           R+E+A+GL KGHKT+KI    K   DK ++ +R +RLK +QT+H+KF+RDLVREVVGHA 
Sbjct: 4   RYELAIGLNKGHKTSKIR-NVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAP 62

Query: 180 YEKRAMELLXVSKDKRALKFLKRRLGTHXRAKRKREELXNVLAHMXKAXDQA 335
           YEKR MELL VSKDKRALKFLKRRLGTH RAKRKREEL N+L  + KA   A
Sbjct: 63  YEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLRKAQTHA 114


>AE014298-74|AAN09019.1|  115|Drosophila melanogaster CG7622-PA,
           isoform A protein.
          Length = 115

 Score =  150 bits (363), Expect = 8e-37
 Identities = 75/112 (66%), Positives = 89/112 (79%), Gaps = 1/112 (0%)
 Frame = +3

Query: 3   RFEIAVGLRKGHKTTKISAGRKGITDKAIR-IRPARLKGLQTKHSKFVRDLVREVVGHAQ 179
           R+E+A+GL KGHKT+KI    K   DK ++ +R +RLK +QT+H+KF+RDLVREVVGHA 
Sbjct: 4   RYELAIGLNKGHKTSKIR-NVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAP 62

Query: 180 YEKRAMELLXVSKDKRALKFLKRRLGTHXRAKRKREELXNVLAHMXKAXDQA 335
           YEKR MELL VSKDKRALKFLKRRLGTH RAKRKREEL N+L  + KA   A
Sbjct: 63  YEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLRKAQTHA 114


>AY051912-1|AAK93336.1|  801|Drosophila melanogaster LD39933p
           protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = +3

Query: 72  ITDKAIRIRPARLKGLQTKHSK-FVRDLVREVVGHAQYEKRAMELLXVSKDKRALKFLKR 248
           +T   I  R  R   L+T   K + RDL++++      ++R++ELL   K++R  + L R
Sbjct: 273 VTGDGIMERNLRSAELETARKKDYQRDLMQQI----DEKRRSIELLR-EKERRQEEALTR 327

Query: 249 RLGTHXRAKRKREELXNVLAHMXKA 323
           RL    +  +  E+L        KA
Sbjct: 328 RLEAQLKTIQLEEQLEKERVRAEKA 352


>AE014134-2350|AAF53302.2|  800|Drosophila melanogaster CG7110-PB
           protein.
          Length = 800

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = +3

Query: 72  ITDKAIRIRPARLKGLQTKHSK-FVRDLVREVVGHAQYEKRAMELLXVSKDKRALKFLKR 248
           +T   I  R  R   L+T   K + RDL++++      ++R++ELL   K++R  + L R
Sbjct: 273 VTGDGIMERNLRSAELETARKKDYQRDLMQQI----DEKRRSIELLR-EKERRQEEALTR 327

Query: 249 RLGTHXRAKRKREELXNVLAHMXKA 323
           RL    +  +  E+L        KA
Sbjct: 328 RLEAQLKTIQLEEQLEKERVRAEKA 352


>AY051494-1|AAK92918.1|  818|Drosophila melanogaster GH14774p
           protein.
          Length = 818

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 15  AVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHS 134
           ++ LR    T K +  +     KAI +RPAR    + K S
Sbjct: 131 SINLRPAKSTPKATTSKPPPEPKAISVRPARAAAAKAKQS 170


>AF313621-1|AAL78208.1|  818|Drosophila melanogaster CTCF protein.
          Length = 818

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 15  AVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHS 134
           ++ LR    T K +  +     KAI +RPAR    + K S
Sbjct: 131 SINLRPAKSTPKATTSKPPPEPKAISVRPARAAAAKAKQS 170


>AE014296-1240|AAF50573.2|  818|Drosophila melanogaster CG8591-PA
           protein.
          Length = 818

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 15  AVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHS 134
           ++ LR    T K +  +     KAI +RPAR    + K S
Sbjct: 131 SINLRPAKSTPKATTSKPPPEPKAISVRPARAAAAKAKQS 170


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,840,772
Number of Sequences: 53049
Number of extensions: 254255
Number of successful extensions: 627
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1128794130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)