Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2317
         (396 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal prote...   105   9e-24
Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical pr...    28   2.1  
Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical pr...    28   2.1  
Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical pr...    27   4.9  
AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical ...    27   4.9  
AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical ...    27   4.9  

>U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 36 protein.
          Length = 104

 Score =  105 bits (253), Expect = 9e-24
 Identities = 55/104 (52%), Positives = 71/104 (68%)
 Frame = +3

Query: 12  IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 191
           +AVGL KGH  T++           ++ R  R KG+ +K +K VR+LVRE+ G A YE+R
Sbjct: 9   LAVGLNKGHAATQLP----------VKQRQNRHKGVASKKTKIVRELVREITGFAPYERR 58

Query: 192 AMELLXVSKDKRALKFLKRRLGTHXRAKRKREELXNVLAHMXKA 323
            +E+L +SKDKRALKFLKRR+GTH RAK KREEL NV+    KA
Sbjct: 59  VLEMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVIIAQRKA 102


>Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical
           protein T08G5.5b protein.
          Length = 926

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +3

Query: 96  RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLXVSKDKRAL 233
           R   LK L+  HS   + ++ ++  HA YE+RA+ L  + + ++AL
Sbjct: 679 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 724


>Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical
           protein T08G5.5a protein.
          Length = 923

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +3

Query: 96  RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLXVSKDKRAL 233
           R   LK L+  HS   + ++ ++  HA YE+RA+ L  + + ++AL
Sbjct: 676 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 721


>Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical
           protein C25G4.7 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 141 VRDLVREVVGHAQYEKRAMELLXV 212
           +RD + EV+G+ Q++K  +E+L V
Sbjct: 133 IRDFLCEVIGNRQFKKYKLEILTV 156


>AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical
           protein H06I04.3c protein.
          Length = 786

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +3

Query: 108 LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLXVSKDKR 227
           L+  Q +HS+ VR++ +      + EK+ +EL+ ++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771


>AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical
           protein H06I04.3a protein.
          Length = 833

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +3

Query: 108 LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLXVSKDKR 227
           L+  Q +HS+ VR++ +      + EK+ +EL+ ++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,621,354
Number of Sequences: 27780
Number of extensions: 129647
Number of successful extensions: 275
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)