Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2316
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110     29   4.3  
01_05_0344 + 21172101-21172233,21172332-21172402,21172492-211726...    29   4.3  
10_06_0172 + 11473892-11474896                                         28   7.5  
08_02_0076 + 11967606-11967905,11969125-11969223,11969813-119741...    27   9.9  
05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191...    27   9.9  
04_03_0987 - 21460169-21460467,21460934-21461495,21462756-214631...    27   9.9  

>12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110
          Length = 530

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 163 RTDRSGWCXQTLLSWCAAYHRG 98
           R + + W  + L  WCAA HRG
Sbjct: 186 RVETTRWSLEQLNRWCAALHRG 207


>01_05_0344 +
           21172101-21172233,21172332-21172402,21172492-21172653,
           21172995-21173100,21174242-21174439,21174565-21174631,
           21174868-21175051,21175145-21175324,21175408-21175587,
           21176472-21176627,21177487-21178067,21178535-21178640,
           21179152-21179331,21179620-21179892
          Length = 858

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = +3

Query: 180 RHETHER*AQQEDFKHQTLDGLLINRQLWLAE-GLLSCQTKGGRYCGYPRSVRVDARLXD 356
           R ET  + AQ   F  +    ++I +Q       L+ C   G RY GY    R +A    
Sbjct: 203 RKETMGKCAQLAQFDEELYKAIIIVKQSGNDTFSLIKCNFSGMRYAGYSTCFRKEAGSHG 262

Query: 357 RWNIQGVFCSHK 392
           R +  G+F  H+
Sbjct: 263 R-DTAGIFRVHQ 273


>10_06_0172 + 11473892-11474896
          Length = 334

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 303 GRYCGYPRSVRVDARLXDRWNIQG 374
           G Y GYP +VRVDA     +N+ G
Sbjct: 288 GAYPGYPGAVRVDAATGAGYNVVG 311


>08_02_0076 +
           11967606-11967905,11969125-11969223,11969813-11974124,
           11974177-11974211
          Length = 1581

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
 Frame = +3

Query: 162 RAFEKD--RHETHER*AQQEDFKHQTLDGLLINRQLWLAEGLLSCQTKGGRYCG-YPRSV 332
           R+F+ D  R   H    + ++ ++  +  L+I+ + +L   L SC +    YC  +P+  
Sbjct: 475 RSFDVDYWRRILHTGEWKYKNDENDIMPALMISYK-YLPAHLQSCFS----YCAVFPKYH 529

Query: 333 RVDA-RLXDRWNIQGVFCSHKISTSPTHRG 419
           R +  RL D W  Q + CS  I T P   G
Sbjct: 530 RYEKERLIDMWIAQDLLCSADIHTRPEDIG 559


>05_07_0146 +
           28018236-28018580,28018670-28018777,28018984-28019148,
           28019269-28019736,28019823-28019936,28020038-28020715
          Length = 625

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +1

Query: 67  NFDHDKHIFTGHGGKQR--TKKEASXHTNH 150
           +FDH  H    HGG++R  +  EA  H +H
Sbjct: 275 HFDHHNHHHPIHGGRERGSSPAEADHHRHH 304


>04_03_0987 -
           21460169-21460467,21460934-21461495,21462756-21463190,
           21463757-21464185
          Length = 574

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
 Frame = +3

Query: 246 LINRQLWLAEGLLSCQTKGGRYCG-YPRSVRVDARLXDRWNIQGVFCSHKISTSPTHRG- 419
           +  R + LAE  L+       Y G   R V   AR    W++ G   +  +   P+H G 
Sbjct: 493 IARRAIELAEARLARDGWPEYYDGKLGRYVGKQARKLQTWSVAGYLVAKMMVEDPSHLGM 552

Query: 420 CDLERDNATNEPSSK 464
             LE D A  +P  K
Sbjct: 553 ISLEEDRAMMKPVLK 567


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,204,348
Number of Sequences: 37544
Number of extensions: 299978
Number of successful extensions: 662
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)