Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2315
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    26   6.7  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   6.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   8.9  

>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 446 RNTSIILRQPP*SHLNMNADSRYATLRPTMIEFWQ 550
           +  S +  +   +HLN++ D  Y   +P  + FW+
Sbjct: 364 KTRSTVAEEDDITHLNISPDRLYLNKKPEDLNFWK 398


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -3

Query: 140  FSTGRWGPE*APWLIETGRVQGDNIHDSTDNT 45
            F+   W P   PW   T  +  D +H+   N+
Sbjct: 1679 FAKSHWEPVIEPWTFSTTAIMKDGMHEVNINS 1710


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 355  LSISKAGSLCETFSFCTKTF 296
            +S+S+   LC  FSF T TF
Sbjct: 1531 ISLSQIDDLCNGFSFTTSTF 1550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,207,106
Number of Sequences: 5004
Number of extensions: 67227
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)