Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2315
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1275 + 25382959-25383765,25383850-25384050,25384693-253848...    30   2.3  
01_02_0083 - 10959091-10959222,10959318-10959501,10959935-109600...    29   3.0  
03_02_0619 + 9904405-9904586,9905315-9906764,9907320-9907509,990...    29   5.3  
01_01_0091 - 719842-720902,721042-721071,721521-722226                 29   5.3  
04_04_1404 + 33302080-33303341,33303435-33305307                       28   9.3  

>07_03_1275 +
           25382959-25383765,25383850-25384050,25384693-25384888,
           25385583-25385767
          Length = 462

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 151 PLLIRNAQSVGSHRSVLKQP*PAWTPPKCTDVNMCC 258
           PLL  NA    ++R VL+   P W P   T V + C
Sbjct: 126 PLLETNALQYSAYREVLQADPPEWLPDSSTSVCLQC 161


>01_02_0083 -
           10959091-10959222,10959318-10959501,10959935-10960056,
           10960143-10960472
          Length = 255

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 32  RVTILCCLCCHGYCHPGPDRSLLTMEL 112
           R  IL C  CH +C P P  SLL+  +
Sbjct: 148 RFIILWCFPCHFFCFPFPPYSLLSFRI 174


>03_02_0619 +
           9904405-9904586,9905315-9906764,9907320-9907509,
           9909578-9910164
          Length = 802

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 4   SAVPKSRRGTCYDLVLSVLSWILSPW 81
           SA P+  R   +DL  +VLS IL+PW
Sbjct: 696 SAWPRPERRLLFDLANTVLSEILAPW 721


>01_01_0091 - 719842-720902,721042-721071,721521-722226
          Length = 598

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 220 WTPPKCTDVNMCCGR-RRICTGSSPAETSSCR 312
           W+ P  TDV + C R +R+C  SS   T+ C+
Sbjct: 202 WSAPNITDVCIDCERQQRLCGFSSQRRTAFCK 233


>04_04_1404 + 33302080-33303341,33303435-33305307
          Length = 1044

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 49  LSVLSWILSPWT-RPVSINHGAYSGPHRPVLNKTLPLLIR 165
           L +  W  +  +  P S+  G Y  P  PVLN+ +P ++R
Sbjct: 114 LQLFRWFFTVQSVSPPSVVGGCYFQPRGPVLNRYIPCVLR 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,910,949
Number of Sequences: 37544
Number of extensions: 483216
Number of successful extensions: 1002
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)