Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2315
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.58 
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   2.4  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   9.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 22/68 (32%), Positives = 33/68 (48%)
 Frame = +2

Query: 356  QPRL*I*TRRDVTRSLHGNQLIAKRHPEMYRNTSIILRQPP*SHLNMNADSRYATLRPTM 535
            QPRL +        ++ GN LIA  +  +   +S   R+P   H+  + DS Y+TL  T 
Sbjct: 1291 QPRLTVNHAYRDAVTVPGNNLIAT-NTTVSSGSSEDHRRPLSEHIYSSIDSDYSTLERTA 1349

Query: 536  IEFWQLQQ 559
               W+ QQ
Sbjct: 1350 ---WRQQQ 1354


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 583 IKIYGKNNLL*LPKFDHCWSKCCVSGIS 500
           IK+YG    L +  ++  W KC +S  S
Sbjct: 93  IKLYGLTKNLEIKNYNIDWDKCILSSES 120


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 313 KRXFHTDFPLC*STTTAPVNMNTEGRDKVI 402
           K   H D P   +TTTA V  +T   + VI
Sbjct: 132 KLEIHRDLPGKSTTTTAEVKRDTINPEDVI 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,640
Number of Sequences: 438
Number of extensions: 4732
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)