Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2314
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...   138   6e-34
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    29   0.77 
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    27   3.1  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    27   3.1  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    27   3.1  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    27   3.1  
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    25   7.2  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    25   9.5  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    25   9.5  

>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score =  138 bits (334), Expect = 6e-34
 Identities = 69/102 (67%), Positives = 82/102 (80%)
 Frame = +3

Query: 333 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASN 512
           MSE  +A++ +EIWKI++L+K L    GNGTSMI+LIIPP +QISR S MLA+E+GTASN
Sbjct: 1   MSE--TAEKAIEIWKIRRLVKQLINCHGNGTSMITLIIPPGEQISRYSNMLAEEYGTASN 58

Query: 513 IKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYWGTIXTE 638
           IKSRVNRLSVL AITS + RLKLY KVP NGLVIY G +  E
Sbjct: 59  IKSRVNRLSVLSAITSTRERLKLYNKVPDNGLVIYCGEVIME 100


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = +3

Query: 312 LNKKRNKMSEE--SSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKML 485
           LN+  N +S    SSAD  +E W   K I S + +R   TS  S +  P +    +   L
Sbjct: 10  LNRLNNGLSSNNGSSADEGLEHWNPLKKIHSADSSRRRSTS--SQLNQPSNY--HMHSSL 65

Query: 486 ADEFGTASNIKSRVNRL 536
            +E    S+I S  +R+
Sbjct: 66  HEEVSVGSSIASPSSRI 82


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +1

Query: 442 SFHLRIKSREYQRCWLMNLVQLPISSHV 525
           S+  R   R+YQ CW+++++   +S++V
Sbjct: 2   SWFYRFFIRDYQNCWMVSIMGTGLSANV 29


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +1

Query: 442 SFHLRIKSREYQRCWLMNLVQLPISSHV 525
           S+  R   R+YQ CW+++++   +S++V
Sbjct: 2   SWFYRFFIRDYQNCWMVSIMGTGLSANV 29


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +1

Query: 442 SFHLRIKSREYQRCWLMNLVQLPISSHV 525
           S+  R   R+YQ CW+++++   +S++V
Sbjct: 2   SWFYRFFIRDYQNCWMVSIMGTGLSANV 29


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +1

Query: 442 SFHLRIKSREYQRCWLMNLVQLPISSHV 525
           S+  R   R+YQ CW+++++   +S++V
Sbjct: 2   SWFYRFFIRDYQNCWMVSIMGTGLSANV 29


>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 200 QTALI*FEPDGRDTSRLRSHFXVYIYVCGCS 108
           Q   I FEP   D  +LR  +  Y  + GC+
Sbjct: 36  QQVAIKFEPRRSDAPQLRDEYRTYKLLAGCT 66


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 580 SLSRCCTEVIAPSTERRFTRDLILEAVPNSSANIFDTLEI*SLGG 446
           S++R   ++ A +T  R   DL+ EAV  ++   FD  E+   GG
Sbjct: 320 SINRLRYDLAASATLNRMA-DLVTEAVEKANMEPFDISEVILAGG 363


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +3

Query: 348 SADRNVEIWKIKKLIKSL 401
           SAD+ ++IW  +KL+KS+
Sbjct: 155 SADKLIKIWNGEKLVKSI 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,829
Number of Sequences: 5004
Number of extensions: 49196
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)