Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2314
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1085 - 23851852-23853165 170 9e-43
03_05_0830 + 28034179-28035492 169 2e-42
01_07_0127 + 41234826-41236136 164 6e-41
08_01_0343 - 3025577-3025810,3026428-3026505,3026630-3026748,302... 30 1.4
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336... 29 4.2
10_01_0353 + 3882691-3882937,3883216-3883320,3883780-3883907 28 5.6
12_02_0966 - 24906361-24906958,24907084-24907250,24907403-249076... 28 7.4
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732... 28 7.4
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747... 28 7.4
01_01_0132 - 1197988-1198206,1198255-1198356,1198518-1198821,119... 27 9.8
>07_03_1085 - 23851852-23853165
Length = 437
Score = 170 bits (413), Expect = 9e-43
Identities = 81/104 (77%), Positives = 90/104 (86%)
Frame = +3
Query: 333 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASN 512
MS+ DRN+EIWKIKKLIK+LE ARGNGTSMISLI+PP+DQI+RV+KML DE+GTASN
Sbjct: 1 MSDSHETDRNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQIARVAKMLGDEYGTASN 60
Query: 513 IKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYWGTIXTEXG 644
IKSRVNR SVL AITS Q RLKLY KVPPNGLV+Y GTI TE G
Sbjct: 61 IKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDG 104
>03_05_0830 + 28034179-28035492
Length = 437
Score = 169 bits (411), Expect = 2e-42
Identities = 80/104 (76%), Positives = 90/104 (86%)
Frame = +3
Query: 333 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASN 512
MS+ D+N+EIWKIKKLIK+LE ARGNGTSMISLI+PP+DQ+SRV+KML DE+GTASN
Sbjct: 1 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASN 60
Query: 513 IKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYWGTIXTEXG 644
IKSRVNR SVL AITS Q RLKLY KVPPNGLV+Y GTI TE G
Sbjct: 61 IKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDG 104
>01_07_0127 + 41234826-41236136
Length = 436
Score = 164 bits (398), Expect = 6e-41
Identities = 75/104 (72%), Positives = 89/104 (85%)
Frame = +3
Query: 333 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASN 512
M++ D+N+EIWK+KKLIK L+ ARGNGTSMISLI+PP+DQ+SRV+KML DE+GTASN
Sbjct: 1 MADSHETDKNIEIWKVKKLIKGLDAARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASN 60
Query: 513 IKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYWGTIXTEXG 644
IKSRVNR SVL AITS Q RLKLY +VPPNGLV+Y GTI T+ G
Sbjct: 61 IKSRVNRQSVLAAITSAQQRLKLYNRVPPNGLVLYTGTIVTDEG 104
>08_01_0343 -
3025577-3025810,3026428-3026505,3026630-3026748,
3027566-3027645,3028034-3028107,3028536-3028620,
3028704-3028789,3028968-3029038,3029126-3029207,
3029490-3029531,3029552-3029584,3029699-3029794,
3030163-3030414,3030970-3031149,3032079-3032119,
3032341-3032470,3032504-3032606,3032686-3032773,
3033151-3033304,3033688-3033739,3033815-3033894,
3034478-3034789,3034886-3034955,3035033-3035100,
3035405-3035678,3036408-3036580,3037036-3037128,
3037228-3037443
Length = 1121
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +3
Query: 396 SLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNIKSRVNRLSVLGAITS-VQHR 572
SLE + G G S+ + + ++ + L+ +FG ++++ + L VL +I S +Q
Sbjct: 134 SLEGSCGKGLSVRKTALDTVSECLQILRFLSKDFGGSTSLPENAHLLRVLISIVSCLQSE 193
Query: 573 LKLYTKVPPNG 605
L L K PNG
Sbjct: 194 LNLTDK--PNG 202
>01_01_0453 -
3361460-3361549,3361660-3361846,3362038-3362139,
3362239-3362306,3362976-3363175,3363253-3363595,
3363837-3363893,3364011-3364727,3364805-3365007,
3365171-3365297
Length = 697
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 282 YTNIXFXVN*LNKKRNKMSEESSADRNVEIWKIKKLIKSLE 404
Y + +N L+KK +M E+ D + EI +KKL+K +E
Sbjct: 347 YAELYQIINDLSKKTEEM-EKMKVDSDQEILLLKKLVKVME 386
>10_01_0353 + 3882691-3882937,3883216-3883320,3883780-3883907
Length = 159
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 354 DRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLAD 491
+R++E+W+I K ++ A+ TS ISL+ +++RVS D
Sbjct: 93 ERDLEVWRISKEVQVNMEAQTKSTSRISLL----GEVNRVSTRTVD 134
>12_02_0966 -
24906361-24906958,24907084-24907250,24907403-24907650,
24907824-24908001,24908196-24908372,24908459-24908563,
24908633-24908770,24909757-24910836
Length = 896
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 258 CKDIILVIYTNIXFXVN*LNKKRNKMSEESSADR 359
C+D+ L+I +NI + L + R + EE+ ADR
Sbjct: 515 CEDLRLIIQSNIYNYLGILLEGRERFEEEAIADR 548
>07_03_1578 +
27872636-27872840,27872928-27873175,27873215-27873295,
27873665-27873822,27874391-27874450,27874655-27874873,
27875100-27875201,27875352-27875500,27875582-27875734,
27875839-27876194
Length = 576
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +3
Query: 375 KIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNI-KSRVNRLSVLGA 551
K K+++++ + + GN ++ S+I + L G+ SN+ K + L +LGA
Sbjct: 301 KAKEIVEAAKASMGNYNTICSII--------ELGARLISHAGSLSNLAKCAASTLQILGA 352
Query: 552 ITSVQHRLKLYTKVPPNGLVIY 617
++ LK P GL+ +
Sbjct: 353 EKALFRALKTRGNTPKYGLIFH 374
>01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,
7472855-7473019,7473689-7474821,7474902-7475426,
7477077-7477249,7478737-7478831,7478893-7481688
Length = 1693
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +3
Query: 366 EIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLAD 491
E+ +++KL+ S+E+ GNG M++ +D +S V+ L D
Sbjct: 1125 EVKELEKLVDSIEVDIGNGGKMMA---SDEDPVSEVNSKLRD 1163
>01_01_0132 -
1197988-1198206,1198255-1198356,1198518-1198821,
1199221-1199292,1199384-1199420,1199527-1199585,
1199844-1200128,1200293-1200465,1201020-1201213,
1202245-1202374
Length = 524
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 515 QVTCESSLSAWRNYFCTAP 571
+VT +++ +AW NY CT P
Sbjct: 410 EVTFDNATTAWLNYTCTVP 428
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,189,084
Number of Sequences: 37544
Number of extensions: 302589
Number of successful extensions: 737
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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