Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2314
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016452-11|AAB66012.1|  443|Caenorhabditis elegans Hypothetical...   174   5e-44
J05274-1|AAA27984.1|  360|Caenorhabditis elegans protein ( C.ele...    32   0.31 
AF067211-13|AAC16993.1|  360|Caenorhabditis elegans Protein kina...    32   0.31 
AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AL132949-35|CAI70419.1|  466|Caenorhabditis elegans Hypothetical...    27   8.7  
AL132949-34|CAB61101.3|  574|Caenorhabditis elegans Hypothetical...    27   8.7  

>AF016452-11|AAB66012.1|  443|Caenorhabditis elegans Hypothetical
           protein T05H4.6 protein.
          Length = 443

 Score =  174 bits (423), Expect = 5e-44
 Identities = 81/101 (80%), Positives = 94/101 (93%)
 Frame = +3

Query: 342 ESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNIKS 521
           + +ADRNVE+WKIK+LIKSLE+ARGNGTSMISLIIPPKDQ++R+ +MLA+E+GTASNIKS
Sbjct: 13  DDAADRNVEMWKIKRLIKSLELARGNGTSMISLIIPPKDQVARIQRMLAEEYGTASNIKS 72

Query: 522 RVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYWGTIXTEXG 644
           RVNRLSVLGAITSVQ RLKLY KVPPNGLV+Y GTI T+ G
Sbjct: 73  RVNRLSVLGAITSVQGRLKLYNKVPPNGLVVYCGTIMTDEG 113


>J05274-1|AAA27984.1|  360|Caenorhabditis elegans protein (
           C.elegans casein kinaseII-alpha gene, complete cds. ).
          Length = 360

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 22/55 (40%), Positives = 31/55 (56%)
 Frame = +3

Query: 375 KIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNIKSRVNRLS 539
           KIK+ IK LE  RG GT++I+L+   KD ISR   ++ +     S+ K     LS
Sbjct: 76  KIKREIKILENLRG-GTNIITLLDVVKDPISRTPALIFEHVNN-SDFKQLYQTLS 128


>AF067211-13|AAC16993.1|  360|Caenorhabditis elegans Protein kinase
           protein 3 protein.
          Length = 360

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 22/55 (40%), Positives = 31/55 (56%)
 Frame = +3

Query: 375 KIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNIKSRVNRLS 539
           KIK+ IK LE  RG GT++I+L+   KD ISR   ++ +     S+ K     LS
Sbjct: 76  KIKREIKILENLRG-GTNIITLLDVVKDPISRTPALIFEHVNN-SDFKQLYQTLS 128


>AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical
           protein C09E7.5 protein.
          Length = 496

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
 Frame = +3

Query: 315 NKKRNKMSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADE 494
           NKKR++ S+++   +N EI  +KK + SL  ++    +M S I     +++   K L + 
Sbjct: 124 NKKRDEASKKTLNSKNEEIEHLKKRVISLSNSQSENETMKSKI----SKLTESEKKLKET 179

Query: 495 FGTASNIKSRVN-RLSVLGA 551
            G  +  +++++ R+S L A
Sbjct: 180 NGKVTKSRNQLSERVSELEA 199


>Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical
           protein F23D12.5 protein.
          Length = 867

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 371 MEDKETYKELGNGQRKWNIYDIPDHST*GSNLESIKDVG 487
           M DK T + LGN    ++   +        N ES+KD+G
Sbjct: 476 MNDKNTVQRLGNAWAVFDFEGVTQLRDFAKNYESLKDIG 514


>AL132949-35|CAI70419.1|  466|Caenorhabditis elegans Hypothetical
           protein Y53F4B.27b protein.
          Length = 466

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 45  HMLXGNRNKKKSKNPRTRRKVRAT 116
           H + GN  KK++K+ +TR+K R++
Sbjct: 84  HEVQGNVTKKRTKHSKTRQKARSS 107


>AL132949-34|CAB61101.3|  574|Caenorhabditis elegans Hypothetical
           protein Y53F4B.27a protein.
          Length = 574

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 45  HMLXGNRNKKKSKNPRTRRKVRAT 116
           H + GN  KK++K+ +TR+K R++
Sbjct: 192 HEVQGNVTKKRTKHSKTRQKARSS 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,324,889
Number of Sequences: 27780
Number of extensions: 277140
Number of successful extensions: 716
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)