Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2313
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   200   1e-52
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   196   2e-51
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    29   0.70 
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   2.1  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   3.7  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   4.9  
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    26   4.9  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   6.5  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.5  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   6.5  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  200 bits (489), Expect = 1e-52
 Identities = 98/179 (54%), Positives = 130/179 (72%)
 Frame = +3

Query: 3   IVANXKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLXVEKWFGSKK 182
           I  +  + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++     +  +  W GS+K
Sbjct: 5   IYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQGNTIKFIV-WHGSRK 63

Query: 183 ELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRR 362
             A +RT  S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  R 
Sbjct: 64  HNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRV 123

Query: 363 VKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNXDIRKFLDGLYVSEK 539
           +K  PGVTV  S   KDE+IIEGNSLE+VS SAA I+Q   V+N DIRKFLDG+YVSE+
Sbjct: 124 IKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSER 182


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  196 bits (478), Expect = 2e-51
 Identities = 96/179 (53%), Positives = 128/179 (71%)
 Frame = +3

Query: 3   IVANXKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLXVEKWFGSKK 182
           I  +  + IP G+TV +K+R VTV GPRG LK+N +H+ ++++     +  +  W GS+K
Sbjct: 5   IYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQGNTIKFIV-WHGSRK 63

Query: 183 ELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRR 362
             A +R+V S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  R 
Sbjct: 64  HNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRV 123

Query: 363 VKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNXDIRKFLDGLYVSEK 539
           +K  PGVTV  S   KDE+I+EGNSLE+VS SAA I+Q   V+N DIRKFLDG+YVSE+
Sbjct: 124 IKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSER 182


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
 Frame = +3

Query: 24   KIPDGLTVHVKSRLVTV---KGP-RGVLKRNFKHLAVDIRMVNPRLLXVEKWFGSKKELA 191
            K+PDG+ +   SRL      K P    L   F H +VD+ +    L   E WF       
Sbjct: 1564 KVPDGIFLKT-SRLPIFEANKAPYNAYLLDFFTHGSVDMLIEQNNLKQSEIWFVLNDFSL 1622

Query: 192  AVRTVCSHVENMIKGVT 242
             + T+CS + N++  VT
Sbjct: 1623 VLATICSCLGNLLNLVT 1639


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +3

Query: 393 NSPKQKDELIIEGNSLEDVSSSAALIQQS 479
           +SPK+K +L ++G  L+ +  + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/63 (22%), Positives = 35/63 (55%)
 Frame = +3

Query: 57   SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLXVEKWFGSKKELAAVRTVCSHVENMIKG 236
            S+L  +   + ++ RN + L++  ++VN     +E W G +   +AV T  + ++++ + 
Sbjct: 1111 SKLCNLLNDKNIVVRN-QSLSLFHQLVNKYPFLLESWIGLQLVQSAVNTNTADIDDLYRL 1169

Query: 237  VTK 245
            ++K
Sbjct: 1170 LSK 1172


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -2

Query: 206 DCPHGGKLLFGSEPFLNXQETRVYHANVNSQVFKVPFENSAGPFNCHQT 60
           D P+G     GS  F+      V+H+N N+    +  +N     N H +
Sbjct: 386 DFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHS 434


>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +3

Query: 438 LEDVSSSAALIQQSTTVKNXDIRKFLDGLYVSEKTT 545
           + D+S+SA    + T + N ++ K  +GL+++ +T+
Sbjct: 78  MSDISNSACRASKITALNNRELYKDDNGLFITVQTS 113


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 200 PHGGKLLFGSEPFLNXQETRVYHANVNSQVFKVPFENSAGP 78
           PH GK    S   +N  E+R   A+V+S   + PF    GP
Sbjct: 127 PHAGKAA-QSAHVMNSTESRPSSAHVSSSYTQKPFAFPLGP 166


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 190 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 80
           A SFL+P   STF R  F+  +S   C +   LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = -2

Query: 398 RVNDGHTRCHLYPSDVFLPQEVT 330
           ++N+ ++ CH YP  + +P  ++
Sbjct: 152 KINENYSECHSYPQALAVPASIS 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,285,935
Number of Sequences: 5004
Number of extensions: 45090
Number of successful extensions: 118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)