Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2313
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    226   1e-59
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   223   7e-59

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  226 bits (552), Expect = 1e-59
 Identities = 107/186 (57%), Positives = 142/186 (76%), Gaps = 1/186 (0%)
 Frame = +3

Query: 3   IVANXKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RLLXVEKWFGSK 179
           I+A+  ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++   R L V+ WFG++
Sbjct: 4   ILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWFGTR 63

Query: 180 KELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIR 359
           + +AA+RT  SHV+N+I GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R
Sbjct: 64  RTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVR 123

Query: 360 RVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNXDIRKFLDGLYVSEK 539
           +V M  GVT++ S K KDEL+++GN +E VS SAALI Q   VKN DIRKFLDG+YVS+K
Sbjct: 124 KVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDK 183

Query: 540 TTXXLD 557
            T   D
Sbjct: 184 GTITED 189


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  223 bits (546), Expect = 7e-59
 Identities = 106/182 (58%), Positives = 138/182 (75%), Gaps = 3/182 (1%)
 Frame = +3

Query: 21  VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP---RLLXVEKWFGSKKELA 191
           ++IP G+TVHV +++VTV+GPRG L RNFKHL +D +++     R L V+ WFG+++ +A
Sbjct: 1   MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60

Query: 192 AVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKM 371
           A+RT  SHV+N+I GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M
Sbjct: 61  AIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDM 120

Query: 372 APGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNXDIRKFLDGLYVSEKTTXX 551
             GVT++ S K KDEL+++GN +E VS SAALI Q   VKN DIRKFLDG+YVS+K T  
Sbjct: 121 LEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTIT 180

Query: 552 LD 557
            D
Sbjct: 181 ED 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,856,607
Number of Sequences: 37544
Number of extensions: 293532
Number of successful extensions: 643
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)