Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2313
         (612 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT022718-1|AAY55134.1|  190|Drosophila melanogaster RE74350p pro...   292   3e-79
AE014134-2010|AAF53049.1|  190|Drosophila melanogaster CG6141-PB...   292   3e-79
AE014134-2009|AAF53048.2|  190|Drosophila melanogaster CG6141-PA...   292   3e-79
X94613-1|CAA64319.1|  190|Drosophila melanogaster ribosomal prot...   291   4e-79
BT011112-1|AAR82779.1| 2851|Drosophila melanogaster LD31436p pro...    32   0.70 
AF425651-1|AAL65911.1| 4001|Drosophila melanogaster multiple ank...    32   0.70 
AE014297-3507|AAO41601.1| 4001|Drosophila melanogaster CG33106-P...    32   0.70 
AE014297-3506|AAO41600.1| 4001|Drosophila melanogaster CG33106-P...    32   0.70 
AY060683-1|AAL28231.1|  284|Drosophila melanogaster GH12395p pro...    29   3.7  
AE014297-2850|AAN14364.1|  284|Drosophila melanogaster CG31200-P...    29   3.7  
AL031128-1|CAA20006.1| 5327|Drosophila melanogaster EG:49E4.1 pr...    28   8.6  
AE014298-205|AAF45622.3| 5412|Drosophila melanogaster CG3064-PB ...    28   8.6  

>BT022718-1|AAY55134.1|  190|Drosophila melanogaster RE74350p
           protein.
          Length = 190

 Score =  292 bits (716), Expect = 3e-79
 Identities = 140/181 (77%), Positives = 157/181 (86%)
 Frame = +3

Query: 3   IVANXKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLXVEKWFGSKK 182
           I +N  VKIP  +   VK+R+VT+ G RG LKR+FKHLA+D+ M + R L VEKWFG+KK
Sbjct: 4   INSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYMPDKRTLKVEKWFGTKK 63

Query: 183 ELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRR 362
           ELAAVRTVCSH+ENMIKGVT GFQYKMRAVYAHFPINCVT+E N++IEIRNFLGEKYIRR
Sbjct: 64  ELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKYIRR 123

Query: 363 VKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNXDIRKFLDGLYVSEKT 542
           V+MAPGVTVVNS  QKDELI+EGN +E VS SAALIQQSTTVKN DIRKFLDGLYVSEKT
Sbjct: 124 VEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKDIRKFLDGLYVSEKT 183

Query: 543 T 545
           T
Sbjct: 184 T 184


>AE014134-2010|AAF53049.1|  190|Drosophila melanogaster CG6141-PB,
           isoform B protein.
          Length = 190

 Score =  292 bits (716), Expect = 3e-79
 Identities = 140/181 (77%), Positives = 157/181 (86%)
 Frame = +3

Query: 3   IVANXKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLXVEKWFGSKK 182
           I +N  VKIP  +   VK+R+VT+ G RG LKR+FKHLA+D+ M + R L VEKWFG+KK
Sbjct: 4   INSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYMPDKRTLKVEKWFGTKK 63

Query: 183 ELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRR 362
           ELAAVRTVCSH+ENMIKGVT GFQYKMRAVYAHFPINCVT+E N++IEIRNFLGEKYIRR
Sbjct: 64  ELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKYIRR 123

Query: 363 VKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNXDIRKFLDGLYVSEKT 542
           V+MAPGVTVVNS  QKDELI+EGN +E VS SAALIQQSTTVKN DIRKFLDGLYVSEKT
Sbjct: 124 VEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKDIRKFLDGLYVSEKT 183

Query: 543 T 545
           T
Sbjct: 184 T 184


>AE014134-2009|AAF53048.2|  190|Drosophila melanogaster CG6141-PA,
           isoform A protein.
          Length = 190

 Score =  292 bits (716), Expect = 3e-79
 Identities = 140/181 (77%), Positives = 157/181 (86%)
 Frame = +3

Query: 3   IVANXKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLXVEKWFGSKK 182
           I +N  VKIP  +   VK+R+VT+ G RG LKR+FKHLA+D+ M + R L VEKWFG+KK
Sbjct: 4   INSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYMPDKRTLKVEKWFGTKK 63

Query: 183 ELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRR 362
           ELAAVRTVCSH+ENMIKGVT GFQYKMRAVYAHFPINCVT+E N++IEIRNFLGEKYIRR
Sbjct: 64  ELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKYIRR 123

Query: 363 VKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNXDIRKFLDGLYVSEKT 542
           V+MAPGVTVVNS  QKDELI+EGN +E VS SAALIQQSTTVKN DIRKFLDGLYVSEKT
Sbjct: 124 VEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKDIRKFLDGLYVSEKT 183

Query: 543 T 545
           T
Sbjct: 184 T 184


>X94613-1|CAA64319.1|  190|Drosophila melanogaster ribosomal protein
           L9 protein.
          Length = 190

 Score =  291 bits (715), Expect = 4e-79
 Identities = 140/181 (77%), Positives = 156/181 (86%)
 Frame = +3

Query: 3   IVANXKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLXVEKWFGSKK 182
           I +N  VKIP  +   VK+R+VT+ G RG LKR FKHLA+D+ M + R L VEKWFG+KK
Sbjct: 4   INSNQCVKIPKDIKASVKARVVTITGTRGTLKRTFKHLALDMYMPDKRTLKVEKWFGTKK 63

Query: 183 ELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRR 362
           ELAAVRTVCSH+ENMIKGVT GFQYKMRAVYAHFPINCVT+E N++IEIRNFLGEKYIRR
Sbjct: 64  ELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKYIRR 123

Query: 363 VKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNXDIRKFLDGLYVSEKT 542
           V+MAPGVTVVNS  QKDELI+EGN +E VS SAALIQQSTTVKN DIRKFLDGLYVSEKT
Sbjct: 124 VEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKDIRKFLDGLYVSEKT 183

Query: 543 T 545
           T
Sbjct: 184 T 184


>BT011112-1|AAR82779.1| 2851|Drosophila melanogaster LD31436p protein.
          Length = 2851

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = -3

Query: 451  ETSSKELPSMINSSFCLGELTTVTPGA 371
            E+SSK LP+   SS  LG+ +TV+PGA
Sbjct: 2688 ESSSKSLPAAQKSSTTLGKSSTVSPGA 2714


>AF425651-1|AAL65911.1| 4001|Drosophila melanogaster multiple ankyrin
            repeat singleKH domain protein protein.
          Length = 4001

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = -3

Query: 451  ETSSKELPSMINSSFCLGELTTVTPGA 371
            E+SSK LP+   SS  LG+ +TV+PGA
Sbjct: 3252 ESSSKSLPAAQKSSTTLGKSSTVSPGA 3278


>AE014297-3507|AAO41601.1| 4001|Drosophila melanogaster CG33106-PB,
            isoform B protein.
          Length = 4001

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = -3

Query: 451  ETSSKELPSMINSSFCLGELTTVTPGA 371
            E+SSK LP+   SS  LG+ +TV+PGA
Sbjct: 3252 ESSSKSLPAAQKSSTTLGKSSTVSPGA 3278


>AE014297-3506|AAO41600.1| 4001|Drosophila melanogaster CG33106-PA,
            isoform A protein.
          Length = 4001

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = -3

Query: 451  ETSSKELPSMINSSFCLGELTTVTPGA 371
            E+SSK LP+   SS  LG+ +TV+PGA
Sbjct: 3252 ESSSKSLPAAQKSSTTLGKSSTVSPGA 3278


>AY060683-1|AAL28231.1|  284|Drosophila melanogaster GH12395p
           protein.
          Length = 284

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 253 WKPLVTPLIMFSTCEQTVLTAAS-SFLDPNHFSTFRRRGFTMRMSTAKC 110
           W   V P+ +  T E   LT  +  +   NH ++ + +G  M +ST KC
Sbjct: 157 WTNWVQPICLEGTSEPETLTNRNLHYTGFNHMASEKGKGLAMTVSTQKC 205


>AE014297-2850|AAN14364.1|  284|Drosophila melanogaster CG31200-PA
           protein.
          Length = 284

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 253 WKPLVTPLIMFSTCEQTVLTAAS-SFLDPNHFSTFRRRGFTMRMSTAKC 110
           W   V P+ +  T E   LT  +  +   NH ++ + +G  M +ST KC
Sbjct: 157 WTNWVQPICLEGTSEPETLTNRNLHYTGFNHMASEKGKGLAMTVSTQKC 205


>AL031128-1|CAA20006.1| 5327|Drosophila melanogaster EG:49E4.1
            protein.
          Length = 5327

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 393  NSPKQKDE-LIIEGNSLEDVSSSAALIQQSTTVKNXDIRKFLDGLYVSEK 539
            N P +++E LIIE   +E  +  + + Q+S+  K  +I+K       SEK
Sbjct: 886  NEPDEEEEYLIIEKEEVEQYTEDSIVEQESSMTKEEEIQKHQRDSQESEK 935


>AE014298-205|AAF45622.3| 5412|Drosophila melanogaster CG3064-PB
            protein.
          Length = 5412

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 393  NSPKQKDE-LIIEGNSLEDVSSSAALIQQSTTVKNXDIRKFLDGLYVSEK 539
            N P +++E LIIE   +E  +  + + Q+S+  K  +I+K       SEK
Sbjct: 933  NEPDEEEEYLIIEKEEVEQYTEDSIVEQESSMTKEEEIQKHQRDSQESEK 982


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,806,681
Number of Sequences: 53049
Number of extensions: 502836
Number of successful extensions: 1001
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2497240350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)