Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2311
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    26   5.4  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    25   7.2  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    25   7.2  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   9.5  
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    25   9.5  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   9.5  

>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 71  VVFDRDSDTAENECKHIRRKMFKTGSKRRRVSSXEF 178
           ++F  D  TAEN  K ++ +    GSK + ++  +F
Sbjct: 730 ILFASDGGTAENVAKRLQNRASARGSKCKIMAMDDF 765


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 177 FNNLVDYLKGGAPEMGIEEAEPIVIDELSIALGAGPD 287
           F  LV+Y  GG  ++ +E+   +  D  ++ L + PD
Sbjct: 9   FGELVEYFSGGTRQVDVEKL-GVCTDNSNVELSSCPD 44


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 240 AQPLQCPSQELLPSSS 193
           AQPL+ PSQ+LL S S
Sbjct: 353 AQPLELPSQQLLRSQS 368


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 134 TFSSEYVCIRFQRYHCRDQKQRHEFMH 54
           T    +VCI  +R+  RD  ++HE +H
Sbjct: 447 TSEKPFVCICGKRFSRRDNLRQHERLH 473


>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 189 VDYLKGGAPEMGIEEAEPIVIDEL 260
           +DY+    P +G   AEPI +++L
Sbjct: 355 IDYVVAPLPGLGPSTAEPIAVEDL 378


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 520 PRKYTLAXTPWYSPQYSPPXEXRT 449
           P +Y L     Y PQ+ PP + RT
Sbjct: 693 PERYNLFKYRVYLPQFLPPTDSRT 716


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,301,739
Number of Sequences: 5004
Number of extensions: 40864
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)