Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2311
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1119 + 10331275-10331330,10331343-10331462,10332023-10332164     29   2.4  
06_03_0859 - 25473784-25473798,25473862-25473923,25474251-254743...    29   4.2  
03_05_1139 - 30689514-30689609,30689795-30689956,30691245-306912...    28   7.4  
10_08_0359 - 17167829-17169595,17169976-17169996                       27   9.8  

>07_01_1119 + 10331275-10331330,10331343-10331462,10332023-10332164
          Length = 105

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +2

Query: 278 WSRRLQSNLQRHPCVXSIEHDHH*RQVGSRDPSVPADAVRTSHQRPRSVPLLKSS 442
           +S R + +L+R   + SI+   + + V  RDP  P+ A +  +      PLLK +
Sbjct: 49  FSSRTKGSLKRRTALHSIKKKKYEKTVQQRDPKDPSRATKKKNNILALPPLLKDN 103


>06_03_0859 -
           25473784-25473798,25473862-25473923,25474251-25474345,
           25475718-25475831,25476490-25476695,25476834-25476959,
           25479516-25480178
          Length = 426

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 380 PADAVRTSHQRPRSVPLLKSSAAGP 454
           PA + R+S   PR +PLL S A+GP
Sbjct: 58  PASSRRSSGPLPRPLPLLPSPASGP 82


>03_05_1139 -
           30689514-30689609,30689795-30689956,30691245-30691299,
           30691695-30691959,30692749-30692959,30693542-30693721,
           30693802-30693899,30694211-30694277,30694897-30694963,
           30695335-30695447,30695988-30696032,30696116-30696223,
           30696582-30696791,30697464-30697670,30697786-30697875,
           30698168-30698389
          Length = 731

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 273 GAGPDGYRATFKDIHASXASNMTITNVRSDLETHQFQLTLYG 398
           GAG      T     A+  S+  + N R D+ T+ +QL  YG
Sbjct: 139 GAGRGRGSKTVDQTRATSTSSAVVANGRHDILTNMYQLNPYG 180


>10_08_0359 - 17167829-17169595,17169976-17169996
          Length = 595

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = -1

Query: 431 GAVPSAGADVRSVQRQLELMGL*IRPDVSDGH--VRCS*RMDVFEGCSVTVGT---SS*G 267
           G V +      ++ R L   GL +RP  SD H  VRC   + V  GC   V     +S G
Sbjct: 51  GVVETRALTDTTLLRSLAAKGLAVRPGASDEHHTVRCD-AVIVGSGCGGGVAAAVLASAG 109

Query: 266 YRQFVYHNG 240
           Y+  V   G
Sbjct: 110 YKVVVVEKG 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,669,633
Number of Sequences: 37544
Number of extensions: 299523
Number of successful extensions: 609
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)