Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2311
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024790-5|AAF60640.2|  119|Caenorhabditis elegans Hypothetical ...    29   2.9  
U53332-11|AAK31531.1|  668|Caenorhabditis elegans Protein tyrosi...    28   6.6  
AF015882-1|AAC21678.1|  668|Caenorhabditis elegans protein tyros...    28   6.6  
AC024790-4|AAF60636.1|  121|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AC024790-5|AAF60640.2|  119|Caenorhabditis elegans Hypothetical
           protein Y47D7A.2 protein.
          Length = 119

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 541 PSRSYGAPRKYTLAXTPWYSPQYS-PPXEXRTSSRTLEE 428
           P  SY  P+KY +A T   +P YS PP +   SS   +E
Sbjct: 35  PPPSYPTPKKYPVAPTYPSTPSYSAPPAQSAYSSSDNQE 73


>U53332-11|AAK31531.1|  668|Caenorhabditis elegans Protein tyrosine
           phosphatase protein2 protein.
          Length = 668

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = +2

Query: 350 RQVGSRDPSVPADAVRTSHQRPRSVP 427
           RQV S  PS  A + RTSH RPR+ P
Sbjct: 619 RQVTSSRPSSSASS-RTSHSRPRTGP 643


>AF015882-1|AAC21678.1|  668|Caenorhabditis elegans protein tyrosine
           phosphatase protein.
          Length = 668

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = +2

Query: 350 RQVGSRDPSVPADAVRTSHQRPRSVP 427
           RQV S  PS  A + RTSH RPR+ P
Sbjct: 619 RQVTSSRPSSSASS-RTSHSRPRTGP 643


>AC024790-4|AAF60636.1|  121|Caenorhabditis elegans Hypothetical
           protein Y47D7A.7 protein.
          Length = 121

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = -2

Query: 541 PSRSYGAPRKYTLA----XTPWYSPQYSPPXEXRTSSRTLEE 428
           P  SY  P+KY +A     TP YS Q  P     TSS   E+
Sbjct: 35  PPPSYPTPKKYPVAPTYPSTPSYSAQPPPAPSAYTSSDNQED 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,934,407
Number of Sequences: 27780
Number of extensions: 239645
Number of successful extensions: 534
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)