Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2309
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.11 
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    28   0.76 
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    25   4.1  
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    25   7.1  

>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 30.7 bits (66), Expect = 0.11
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +2

Query: 41  TLKSIVSLASSALKSSTENIRASVHESHSRHPSCGIKT 154
           ++ S+VS ASSAL +S  +  ASV  S S   S  +KT
Sbjct: 262 SVSSVVSSASSALSASASSASASVSSSASSDASPALKT 299


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 27.9 bits (59), Expect = 0.76
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +2

Query: 20  KKDSRYITLKSIVSLASSALKSSTENIRASVHESHSRHPS 139
           KK+   + + S V++A++A  +STE++ + V +S S+  S
Sbjct: 156 KKEESNVAIPSEVTVAANAFSASTEDVYSIVGDSLSKKAS 195


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -1

Query: 381 SXQKKVKCSFSDCNCNTGYSVGFMCNATGQCECLPGVIGEKCDRC 247
           S + +  C F+DCN     +       T +C+ LP  I   C +C
Sbjct: 189 SDELRANCPFTDCNSINHLTCLASSFLTEECQVLP--IEGMCTKC 231


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 172 CNSLQVGFDSARRMPRMRLVYRCPNILGRRFKRAT 68
           C + +   D++++M     +YR PNIL   FKR T
Sbjct: 307 CENCKQLVDASKQMT----IYRAPNILTIHFKRFT 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,612,147
Number of Sequences: 5004
Number of extensions: 29037
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)