Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2309
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0600 - 22640194-22640643,22640754-22640915,22641018-226410... 31 0.57
07_01_0407 + 3122383-3122445,3135572-3136393 29 2.3
07_01_0403 + 3077544-3077606,3090738-3091559 29 2.3
07_01_0399 + 3043624-3043818,3045494-3046315 29 2.3
01_02_0058 - 10699702-10700517,10700997-10701206 29 2.3
04_04_1176 + 31494318-31495685 28 4.0
02_05_1245 + 35223504-35224778 28 4.0
11_06_0300 + 22095396-22096145,22096261-22096344,22097062-220973... 27 5.3
03_06_0365 - 33399422-33399925,33400470-33400583,33400762-334009... 27 5.3
11_06_0037 - 19478885-19480472,19483125-19483267 27 7.0
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 27 7.0
>06_03_0600 -
22640194-22640643,22640754-22640915,22641018-22641062,
22641230-22641322,22642815-22642901,22642963-22643049
Length = 307
Score = 30.7 bits (66), Expect = 0.57
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 329 GIQLALCVTPPGSVSACREL*ERSVIGVQKGNKKKNYIAYNF 204
G+Q CV G + C+EL I +KGN++ YI +
Sbjct: 26 GLQAGKCVGAMGGTAVCKELVNGYYIIHEKGNERTGYITNTY 67
>07_01_0407 + 3122383-3122445,3135572-3136393
Length = 294
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 117 SCTDALIFSVEDLSALLANETMDFKV 40
SC D LIF+ D S++L+N + F V
Sbjct: 70 SCADILIFAARDASSILSNGRVRFDV 95
>07_01_0403 + 3077544-3077606,3090738-3091559
Length = 294
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 117 SCTDALIFSVEDLSALLANETMDFKV 40
SC D LIF+ D S++L+N + F V
Sbjct: 70 SCADILIFAARDASSILSNGRVRFDV 95
>07_01_0399 + 3043624-3043818,3045494-3046315
Length = 338
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 117 SCTDALIFSVEDLSALLANETMDFKV 40
SC D LIF+ D S++L+N + F V
Sbjct: 114 SCADILIFAARDASSILSNGRVRFDV 139
>01_02_0058 - 10699702-10700517,10700997-10701206
Length = 341
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 117 SCTDALIFSVEDLSALLANETMDFKV 40
SC D LIF+ D S++L+N + F V
Sbjct: 119 SCADILIFAARDASSILSNGRVRFDV 144
>04_04_1176 + 31494318-31495685
Length = 455
Score = 27.9 bits (59), Expect = 4.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 165 RYRWVLIPQEGCLECDSCTD 106
R RW+ +P+ C EC SC D
Sbjct: 183 RKRWMRLPRMPCDECFSCAD 202
>02_05_1245 + 35223504-35224778
Length = 424
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 11 RDKKKDSRYITLKSIVSLASSALKSSTENIRASVHESHSRHP 136
++++KD R KS V+ AS A +ST H R P
Sbjct: 20 KEEEKDHRMCKTKSSVATASMAASASTATTPRKHQHQHQRSP 61
>11_06_0300 +
22095396-22096145,22096261-22096344,22097062-22097304,
22098535-22098702,22098895-22099008,22099378-22099890
Length = 623
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 266 PITPGKHSHCPVALHIKPTEYPVLQLQSENEHFTFF*XLHLVXIY 400
P G + CP+AL + PT +Q+ E F++ + +V Y
Sbjct: 226 PQRGGMRTACPLALILSPTRELSMQIHEEARKFSYQTGVRVVVAY 270
>03_06_0365 -
33399422-33399925,33400470-33400583,33400762-33400929,
33401305-33401547,33402148-33402231,33402323-33403098,
33404423-33404636
Length = 700
Score = 27.5 bits (58), Expect = 5.3
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 221 SFFFCYLSGHRSHFSPITP-GKHSHCPVALHIKPTEYPVLQLQSENEHFTFF*XLHLVXI 397
+F F +SG S P P G + P+AL + PT +Q+ E F + + +V
Sbjct: 290 AFCFPIISGIMSSRPPQRPRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVRVVVA 349
Query: 398 Y 400
Y
Sbjct: 350 Y 350
>11_06_0037 - 19478885-19480472,19483125-19483267
Length = 576
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 242 SGHRSHFSPITPGKHSHCPVALHIKPTEY-PVLQLQSE 352
S HR + I P H H P I+ +EY +LQL E
Sbjct: 141 SNHRPNIQEINPASHEHIP---KIQSSEYCCILQLSDE 175
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 27.1 bits (57), Expect = 7.0
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 221 SFFFCYLSG-HRSHFSPITPGKHSHCPVALHIKPTEYPVLQLQSENEHFTFF*XLHLVXI 397
+F F +SG RS P + G + P+AL + PT +Q+ E F + + +V
Sbjct: 376 AFCFPIISGIMRSRPPPRSRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVKVVVA 435
Query: 398 Y 400
Y
Sbjct: 436 Y 436
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,028,986
Number of Sequences: 37544
Number of extensions: 173916
Number of successful extensions: 408
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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