Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2307
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    45   4e-06
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    28   0.46 
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   2.5  
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    24   7.6  
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    24   7.6  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    24   7.6  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    24   10.0 

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 45.2 bits (102), Expect = 4e-06
 Identities = 25/83 (30%), Positives = 40/83 (48%)
 Frame = +3

Query: 144 LHAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIV 323
           L +E ++ LP  V+RRI  LR LQK + D+E++F  E+                 R+ +V
Sbjct: 63  LTSEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKRRSEVV 122

Query: 324 NGTYEPNDDECLNPWRDDTEEEQ 392
            G  EP ++E       D  E++
Sbjct: 123 RGADEPTEEEIKKGEAADENEKK 145


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 28.3 bits (60), Expect = 0.46
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 128 GHHKSPSCRSDGIPTPECSSANPRLENSSEGVCRH*GQVL 247
           GHHK+P CR+  +      S N R E   + V RH G V+
Sbjct: 485 GHHKNPKCRAKKLVV---ESRNGRREYVQDAVRRH-GDVI 520


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 87   HLLKSGVTRNEMIAAITNRLHAEAMASLP 173
            HLL++  T +E  AA   +LH + + S P
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEP 1624


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 152 CMKAICDGRYHFITGHATFQ 93
           C+K +    + +ITGHA F+
Sbjct: 255 CLKFVRPSLFGYITGHAVFE 274


>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 353 FIIIRFICAIHNKSSLFIKRLVKFFIFAFECMYFTVKLG--LNVDKLLL 213
           F II F     + SSL    +  F I +    +FT+ LG  +NV++  L
Sbjct: 109 FCIIWFAANYFSNSSLGFTNVASFTIISSMSGFFTLGLGTIVNVERFTL 157


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 214 RRSLSTLRPSFTVKYMHSNANMKNFTSLF 300
           RRS + L PS T   +  N  + NF S F
Sbjct: 612 RRSFTLLFPSKTTWVLFLNLTLLNFASFF 640


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = +3

Query: 81  AQHLLKSGVTRNEMIAAITNRLHAEA-----MASLPPNVRRRIRALRTLQKEFVDIEAKF 245
           AQ +L SG+    M   IT++LH  A     M +LP  V   + A   ++K +   EAK 
Sbjct: 174 AQMVLSSGIPIVMMPLDITHQLHTSAKRIARMEALPNRVGPVVAAWLRMEKAY---EAKK 230

Query: 246 Y 248
           Y
Sbjct: 231 Y 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,455,408
Number of Sequences: 5004
Number of extensions: 26687
Number of successful extensions: 78
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)